Pairwise Alignments

Query, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 335 a.a., Ubiquinol oxidase subunit II, cyanide insensitive from Pseudomonas putida KT2440

 Score =  142 bits (358), Expect = 1e-38
 Identities = 115/364 (31%), Positives = 178/364 (48%), Gaps = 45/364 (12%)

Query: 7   LRLIWWGLIGALLIGFMITDGFDMGVGALLPILGQSESDKRVMINSIAPHWDGNQVWLIT 66
           L LIW  +I   ++ +++ DGFD+G+G L P + + E D+ VM+N++AP WDGN+ WL+ 
Sbjct: 5   LPLIWAVIIIFGVMMYVVMDGFDLGIGMLFPFV-KGEQDRDVMMNTVAPVWDGNETWLVL 63

Query: 67  AGGALFAAWPLVYATSFSSLYIAMYLILLALWLRPLALEYRAKIDTPSWRKICDISISLS 126
            G  LF A+P+ YA    +LY+ + L+L+ L  R +A E+R K      R I D +    
Sbjct: 64  GGAGLFGAFPMAYAVVLEALYLPLILMLIGLIFRGVAFEFRFKAKADK-RHIWDKAFIWG 122

Query: 127 GLIPPLLFGVAFGNLMQGLPFSLNALLMVDYH--GSFIDLITPFSVLSGGIGVLMA-LVQ 183
            LI     GVA G  ++G         +VD H  G  +D +TPFS+   G+G+++A  + 
Sbjct: 123 SLIATFFQGVALGAFLEGFK-------VVDRHFAGGTLDWLTPFSLFC-GLGLIVAYTLL 174

Query: 184 GSAWLTLKTSDILHKKARLTAQISVLCLFGLFIIGGFMVHGMNGYLIVSSLDYNAISNPL 243
           G  WL +KT   L +K    A+   L L  L +IG           IVS   +  I+ P 
Sbjct: 175 GCTWLIMKTEGPLQQKMHDMARPLALVL--LVVIG-----------IVSL--WTPIAYP- 218

Query: 244 NKVVFQQAGAWLTNFERYPWMWFAPMGGLMMAMGV-FLSAKWKNDAIT-FVCASVTNACI 301
                Q A  W   F     +WF P+  L++      L A  +N   T F+   V     
Sbjct: 219 -----QIADRW---FSMPNLIWFMPVPLLVLVTFYGLLKAVARNAHYTPFLLTLVLIFLG 270

Query: 302 ILTAGFAMFPFIMPSSFEPSHSLTLWDATSSERTLNIMTGVAFVMLPIILFYTAFSYRTM 361
               G +++P I+P       S+++WDA +  ++   M      +LP IL YT +SY   
Sbjct: 271 YSGLGISLWPNIIPP------SISIWDAAAPPQSQGFMLVGTLFILPFILMYTFWSYYVF 324

Query: 362 FGRL 365
            G++
Sbjct: 325 RGKV 328