Pairwise Alignments

Query, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 333 a.a., Cytochrome bd-I ubiquinol oxidase subunit 2 from Pseudomonas sp. DMC3

 Score =  123 bits (308), Expect = 8e-33
 Identities = 98/363 (26%), Positives = 160/363 (44%), Gaps = 41/363 (11%)

Query: 5   DTLRLIWWGLIGALLIGFMITDGFDMGVGALLPILGQSESDKRVMINSIAPHWDGNQVWL 64
           D L L+    +   ++ +++ DG D+GVG L+ +   S+  +R M  SI P WD N+ WL
Sbjct: 4   DWLTLLCAAALAFSVMNYVVLDGTDLGVGMLMGLTPCSKQ-RRAMAVSILPVWDANETWL 62

Query: 65  ITAGGALFAAWPLVYATSFSSLYIAMYLILLALWLRPLALEYRAKIDTPSWRKICDISIS 124
           +  GG L A +PL YA    +LY+   ++ LAL +R +ALE+R        ++I D  ++
Sbjct: 63  VLGGGGLLALFPLAYAILLPALYVPFIVMFLALIVRAMALEFRDYAPNERRKRIVDGVLA 122

Query: 125 LSGLIPPLLFGVAFGNLMQGLPFSLNALLMVDYHGSFIDLITPFSVLSGGIGVLMALVQG 184
           L+ L+   + G+  G L+QG+           Y G   D ++PF V  G + VL  +  G
Sbjct: 123 LASLLTGFIQGMVLGTLVQGIAHQGG-----QYIGDGRDWLSPFPVFCGVVLVLGYVWLG 177

Query: 185 SAWLTLKTSDILHKKARLTAQISVLCLFGLFIIGGFMVHGMNGYLIVSSLDYNAISNPLN 244
           + WL  +T D L +++   A++  L    L ++                + + A   P  
Sbjct: 178 TCWLYWRTLDELQQRSARQARVLSLVTVALLLV---------------LIAWTATLQPQY 222

Query: 245 KVVFQQAGAWLTNFERYPWMWFAPMGGLMMAMGVFLSAKW--KNDAITFVCASVTNACII 302
                    WL            P G ++ A+G   S  +  + D I    A        
Sbjct: 223 ARRLADIRLWL------------PAGLIVSALGWVFSKGFHCRFDFIPLFAALGIFVLAF 270

Query: 303 LTAGFAMFPFIMPSSFEPSHSLTLWDATSSERTLNIMTGVAFVMLPIILFYTAFSYRTMF 362
                A++PFI+P        LTL +A SS  +   M     V++PI L Y  F +R   
Sbjct: 271 AVMLVALYPFIIPP------DLTLSEAASSPTSQIFMLVGFAVLIPITLAYNTFGFRVFS 324

Query: 363 GRL 365
           G++
Sbjct: 325 GKV 327