Pairwise Alignments

Query, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  102 bits (253), Expect = 2e-26
 Identities = 93/370 (25%), Positives = 159/370 (42%), Gaps = 58/370 (15%)

Query: 5   DTLRLIWWGLIGALLIGFMITDGFDMGVGALLPILGQSESDKRVMINSIAPHWDGNQVWL 64
           + L LI+  ++G  L+ ++I DG+D+GVG LLP L +S+  K  MI+SI P WD N+ WL
Sbjct: 8   EVLPLIFLAVMGLALLAYVILDGYDLGVGLLLP-LAESKEQKDTMISSIGPFWDANETWL 66

Query: 65  ITAGGALFAAWPLVYATSFSSLYIAMYLILLALWLRPLALEYRAKIDT---PSWRKICDI 121
           +   G L  A+P+ +     +LY+ + ++L+ L LR +A ++R K  T   P W +   +
Sbjct: 67  VLGVGVLLVAFPMAHGLVLQALYLPVAVMLIGLILRGVAFDFRVKAPTKYVPFWNRAFFV 126

Query: 122 SISLSGLIPPLLFG---VAFGNLMQGLPFSLNALLMVDYHGSFIDLITPFSVLSGGIGVL 178
              L+      + G     F     GL FSL            I L  P +         
Sbjct: 127 GSLLASASQGWMLGSYITGFDKGWLGLSFSLG-----------IALTLPAAY-------- 167

Query: 179 MALVQGSAWLTLKTSDILHKKA-RLTAQI---SVLCLFGLFIIGGFMVHGMNGYLIVSSL 234
             ++ G+ WL +KT   L   A R  A++     + L  +      +  G+         
Sbjct: 168 --ILLGAGWLIMKTEGELQAHAVRWAARVLWPMGVALVAISAATPLVNPGVVAKWFSVPE 225

Query: 235 DYNAISNPLNKVVFQQAGAWLTNFERYPWMWFAPMGGLMMAMGVFLSAKWKNDAITFVCA 294
            +  +  PL+  +   A  W+     +P +  A  G ++ A  V +          FV A
Sbjct: 226 VFGLMPIPLSCAIAFFAVRWVVT---HPNVVKAGYGWVVFAATVLI----------FVLA 272

Query: 295 SVTNACIILTAGFAMFPFIMPSSFEPSHSLTLWDATSSERTLNIMTGVAFVMLPIILFYT 354
                       +++FP I+         + +W A  S  +L ++     + LP+I+ YT
Sbjct: 273 -------FFGLAYSIFPDIVIG------RMNVWQAAVSTGSLTVIFIGVAITLPVIIIYT 319

Query: 355 AFSYRTMFGR 364
            + YR  +G+
Sbjct: 320 IYMYRVFWGK 329