Pairwise Alignments

Query, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., putative Cytochrome bd2, subunit II from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  143 bits (361), Expect = 6e-39
 Identities = 111/363 (30%), Positives = 180/363 (49%), Gaps = 42/363 (11%)

Query: 7   LRLIWWGLIGALLIGFMITDGFDMGVGALLPILGQSESDKRVMINSIAPHWDGNQVWLIT 66
           L +IW+ +I    + +++ DGFD+GVG L P + + + D+ VM+NS+AP WDGN+ WL+ 
Sbjct: 5   LPVIWFAIIVFATLMYIVMDGFDLGVGILFPFI-RDKHDRDVMVNSVAPVWDGNETWLVL 63

Query: 67  AGGALFAAWPLVYATSFSSLYIAMYLILLALWLRPLALEYRAKIDTPSWRKICDISISLS 126
            G  LF A+PL YA    +L I + ++LL L  R +A E+R K  T S R   D S  + 
Sbjct: 64  GGAGLFGAFPLAYAVITDALTIPLVVMLLGLIFRGVAFEFRFKA-TESHRAFWDKSFIVG 122

Query: 127 GLIPPLLFGVAFGNLMQGLPFSLNALLMVDYHGSFIDLITPFSVLSG-GIGVLMALVQGS 185
            ++     GV  G ++ G            + GS +D +TPF++  G G+ V  AL+ G+
Sbjct: 123 SILATFAQGVVVGAVVSGFQVEGRT-----FSGSQLDWLTPFNLFCGVGLVVTYALL-GA 176

Query: 186 AWLTLKTSDILHKKARLTAQISVLCLFGLFIIGGFMVHGMNGYLIVSSLDYNAISNPLNK 245
            WL +K+ D LH  +R+ A    L +  L ++GG  V         + L ++ I      
Sbjct: 177 TWLIMKSEDPLH--SRMCALSRPLLIVLLLVMGGVSVW--------TPLTHDDI------ 220

Query: 246 VVFQQAGAWLTNFERYPWMWFAPMGGLMMAMGVFLSAKWKNDAITFVCASVTNACIIL-- 303
                A  W T    Y   +F P+  L++A  V+L    K          +T   I L  
Sbjct: 221 -----AERWFTLPNLY---YFLPVPVLVLAFSVWLWRSVKKPESHARPFILTLGLIFLGF 272

Query: 304 -TAGFAMFPFIMPSSFEPSHSLTLWDATSSERTLNIMTGVAFVMLPIILFYTAFSYRTMF 362
              G +++P I+P        ++L+ A +  ++ + M   A +++PIIL YT +SY    
Sbjct: 273 SGLGISIWPNIIPP------DISLYAAAAPPQSQSFMLVGALIIIPIILAYTFWSYYVFR 326

Query: 363 GRL 365
           G++
Sbjct: 327 GKV 329