Pairwise Alignments

Query, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 378 a.a., cytochrome bd-II oxidase, subunit II (NCBI) from Escherichia coli BW25113

 Score =  367 bits (941), Expect = e-106
 Identities = 172/379 (45%), Positives = 255/379 (67%), Gaps = 2/379 (0%)

Query: 1   MFEYDTLRLIWWGLIGALLIGFMITDGFDMGVGALLPILGQSESDKRVMINSIAPHWDGN 60
           MF+Y+TLR IWW LIG +L+ FMI+DGFDMG+G LLP++ +++ ++R++INS+  HW+GN
Sbjct: 1   MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60

Query: 61  QVWLITAGGALFAAWPLVYATSFSSLYIAMYLILLALWLRPLALEYRAKIDTPSWRKICD 120
           QVWLI AGGALFAAWP VYA +FS  Y+AM L+L +L+ RPLA +YR KI    WRK+ D
Sbjct: 61  QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120

Query: 121 ISISLSGLIPPLLFGVAFGNLMQGLPFSLNALLMVDYHGSFIDLITPFSVLSGGIGVLMA 180
             + +  L+PP++FG+AFGNL+ G+PF+    L V+Y GSF  L+TPF +L G + + M 
Sbjct: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180

Query: 181 LVQGSAWLTLKTSDILHKKARLTAQISVLCLFGLFIIGGFMVH-GMNGYLIVSSLDYNAI 239
           ++QG  WL LKT  ++H +++L  + + L +   F++ G+ +  G++G+++++  D N  
Sbjct: 181 ILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQ-DANGP 239

Query: 240 SNPLNKVVFQQAGAWLTNFERYPWMWFAPMGGLMMAMGVFLSAKWKNDAITFVCASVTNA 299
           SNPL K+V    GAW+ NF   P +W  P+ G    +   ++         F+ AS+   
Sbjct: 240 SNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQF 299

Query: 300 CIILTAGFAMFPFIMPSSFEPSHSLTLWDATSSERTLNIMTGVAFVMLPIILFYTAFSYR 359
            +I TAG  +FPF+MPSS  P  SLTLWD+TSS+ TL+IM  +  + LPI+L YT +SY 
Sbjct: 300 GVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYY 359

Query: 360 TMFGRLDKQYIERNHHSLY 378
            M+GR+  + + RN + LY
Sbjct: 360 KMWGRMTTETLRRNENELY 378