Pairwise Alignments

Query, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 379 a.a., cytochrome d terminal oxidase, subunit II (NCBI) from Escherichia coli BW25113

 Score =  421 bits (1083), Expect = e-122
 Identities = 200/379 (52%), Positives = 277/379 (73%), Gaps = 1/379 (0%)

Query: 1   MFEYDTLRLIWWGLIGALLIGFMITDGFDMGVGALLPILGQSESDKRVMINSIAPHWDGN 60
           M +Y+ LR IWW L+G LLIGF +TDGFDMGVG L   LG++++++R+MINSIAPHWDGN
Sbjct: 1   MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60

Query: 61  QVWLITAGGALFAAWPLVYATSFSSLYIAMYLILLALWLRPLALEYRAKIDTPSWRKICD 120
           QVWLITAGGALFAAWP+VYA +FS  Y+AM L+L +L+ RP+  +YR+KI+   WR + D
Sbjct: 61  QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120

Query: 121 ISISLSGLIPPLLFGVAFGNLMQGLPFSLNALLMVDYHGSFIDLITPFSVLSGGIGVLMA 180
             I +   +PPL+ GVAFGNL+QG+PF+++  L + Y G+F  L+ PF +L+G + V M 
Sbjct: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180

Query: 181 LVQGSAWLTLKTSDILHKKARLTAQISVLCLFGLFIIGG-FMVHGMNGYLIVSSLDYNAI 239
           + QG+ +L ++T   LH + R TAQ++ L     F + G ++++G++GY++ S++D+ A 
Sbjct: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240

Query: 240 SNPLNKVVFQQAGAWLTNFERYPWMWFAPMGGLMMAMGVFLSAKWKNDAITFVCASVTNA 299
           SNPLNK V ++AGAWL NF   P +W  P  G+++ +   L+A+    A  FV +S+T A
Sbjct: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300

Query: 300 CIILTAGFAMFPFIMPSSFEPSHSLTLWDATSSERTLNIMTGVAFVMLPIILFYTAFSYR 359
           CIILTAG AMFPF+MPSS   + SLT+WDATSS+ TLN+MT VA V++PIIL YTA+ Y 
Sbjct: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360

Query: 360 TMFGRLDKQYIERNHHSLY 378
            MFGR+ K+ IERN HSLY
Sbjct: 361 KMFGRITKEDIERNTHSLY 379