Pairwise Alignments

Query, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., cytochrome d oxidase, subunit II (cydB) from Enterobacter asburiae PDN3

 Score =  141 bits (356), Expect = 2e-38
 Identities = 106/364 (29%), Positives = 176/364 (48%), Gaps = 44/364 (12%)

Query: 7   LRLIWWGLIGALLIGFMITDGFDMGVGALLPILGQSESDKRVMINSIAPHWDGNQVWLIT 66
           + +IW+ +I    + ++I DGFD+G+G L   +G ++ ++ VM+NS+AP WDGN+ WL+ 
Sbjct: 5   ISVIWFAIIVFATLMYIIMDGFDLGIGLLFNFVGDAK-ERDVMVNSVAPVWDGNETWLVL 63

Query: 67  AGGALFAAWPLVYATSFSSLYIAMYLILLALWLRPLALEYRAKIDTPSWRKICDISISLS 126
            G  LF A+PL YA    +L I +  +L+ L  R +A E+R K  TPS RK  D S +  
Sbjct: 64  GGAGLFGAFPLAYAVIVDALTIPLTAMLIGLIFRGVAFEFRFKA-TPSHRKFWDYSFAGG 122

Query: 127 GLIPPLLFGVAFGNLMQGLPFSLNALLMVDYHGSFIDLITPFSVLSGGIGVLMA-LVQGS 185
            L+     G+  G ++ G  F +     V   GS +D +TPF++   GIG+++A  + G+
Sbjct: 123 SLLATFSQGIVVGAMING--FDVEGRRFV---GSALDWLTPFNLFC-GIGLVVAYTLLGT 176

Query: 186 AWLTLKTSDILHKKAR-LTAQISVLCLFGLFIIGGFMVHGMNGYLIVSSLDYNAISNPLN 244
            WL +K+   L  + R LT  + +  +  + ++                    +I  PL 
Sbjct: 177 TWLIMKSEGALQARMRELTRHVLLALMVVIAVV--------------------SIWTPLG 216

Query: 245 KVVFQQAGAWLTNFERYPWMWFAPMGGLMMAMGVFLSAKWKNDAITFVCASVTNACIIL- 303
                     L NF      WF P+  L+    V +    +N A       +T   I L 
Sbjct: 217 WQYVADRWFTLPNF-----FWFLPVPLLVGLFSVLIWRLTRNPASHSRPFLLTLGLIFLG 271

Query: 304 --TAGFAMFPFIMPSSFEPSHSLTLWDATSSERTLNIMTGVAFVMLPIILFYTAFSYRTM 361
               G +++P I+P        +TLW+A +   +   M     +++P+IL YTA+SY   
Sbjct: 272 FSGLGISLWPNIIPP------RITLWEAAAPPASQLFMLVGTLLIIPVILVYTAWSYYVF 325

Query: 362 FGRL 365
            G++
Sbjct: 326 RGKV 329