Pairwise Alignments

Query, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., cytochrome d oxidase, subunit II (cydB) from Enterobacter asburiae PDN3

 Score =  136 bits (343), Expect = 7e-37
 Identities = 107/369 (28%), Positives = 176/369 (47%), Gaps = 54/369 (14%)

Query: 7   LRLIWWGLIGALLIGFMITDGFDMGVGALLPILGQSESDKRVMINSIAPHWDGNQVWLIT 66
           L +IW+ +I    + +++ DGFD+G+G L P   Q+  D+ VM+NS+AP WDGN+ WL+ 
Sbjct: 5   LSIIWFVIIVFATLMYIVMDGFDLGIGILFPAT-QNADDRDVMVNSVAPVWDGNETWLVL 63

Query: 67  AGGALFAAWPLVYATSFSSLYIAMYLILLALWLRPLALEYRAKIDTPSWRKICDISISLS 126
            G ALF A+PL YA    +L I + L+L+ L  R +A E+R K  TP+ R   D +    
Sbjct: 64  GGAALFGAFPLAYAVIVDALTIPLTLMLIGLIFRGVAFEFRFKA-TPAHRPFWDKAFIGG 122

Query: 127 GLIPPLLFGVAFGNLMQGLPFSLNALLMVDYHGSFIDLITPFSVLSG-GIGVLMALVQGS 185
            ++     GV  G ++ G   +  A     Y G  +D  T F++  G G+ V  AL+ GS
Sbjct: 123 SILATFTQGVTVGAVINGFTVTGRA-----YTGGPVDWFTAFNLFCGVGLVVAYALL-GS 176

Query: 186 AWLTLKTSDILHKKARLTAQISVLCLFGLFIIGGFMVHGMNGYLIVSSLDYNAISNPLNK 245
            WL +K+ + L ++ R  ++  ++ L                ++   SL +  ++ P   
Sbjct: 177 TWLVMKSENALQQRMREVSKTLLIVLL--------------AFIAAISL-WTPLAQP--- 218

Query: 246 VVFQQAGAWLTNFERYPWMWFAPMGGLMMAMGVFLSAKWKNDAITFVCASVTNA---CII 302
                A  W T    +   +  P+  L++   +F   +W+       C +  N+     I
Sbjct: 219 ---AIAARWFTLPNLF---YLLPVPALVV---IFSLYQWR-------CLNNPNSHSRPFI 262

Query: 303 LTAGFAMFPF------IMPSSFEPSHSLTLWDATSSERTLNIMTGVAFVMLPIILFYTAF 356
           LT G     F      I P    P  S+TLW A +  ++   M   A +++P+IL YT +
Sbjct: 263 LTLGLIFLGFSGLGISIWPHIIPP--SITLWQAAAPTQSQGFMLVGALLIIPVILVYTFW 320

Query: 357 SYRTMFGRL 365
           SY    G++
Sbjct: 321 SYYVFRGKV 329