Pairwise Alignments

Query, 530 a.a., cytochrome d terminal oxidase subunit 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 472 a.a., Cytochrome bd-II ubiquinol oxidase subunit 1 from Xanthobacter sp. DMC5

 Score =  202 bits (514), Expect = 2e-56
 Identities = 106/306 (34%), Positives = 172/306 (56%), Gaps = 2/306 (0%)

Query: 6   IDVVELSRLQFALTAMFHFLFVPLTIGMSCLLAIMESIYVLTGKQIYQDMTRFWGKLFGI 65
           +D + LSRLQFA T  FH L+  LTIG +  + ++  ++  TGK +Y+D+ RFW +LF +
Sbjct: 1   MDALALSRLQFAFTVGFHILWPTLTIGTAWFVTLLSFLWWRTGKTVYRDLMRFWMRLFAL 60

Query: 66  NFALGVTTGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEALVAFFLESTFVGLFFFGWSRL 125
            F +GV +G+ + ++ GTNW+ +S  V ++ G  LA E + AFFLE+ F+G+  FG +R+
Sbjct: 61  VFGMGVVSGIVLSYEIGTNWAGFSRSVANVLGPLLAYETMTAFFLEAGFIGIMLFGEARV 120

Query: 126 SKRQHLLITWLVALGSSFSALWILVANGWMQNPVGAEFNYQTMRMEMTSFAEVVLNPVAQ 185
           SK  H     +VA G+  S  WI+ +N WMQ P GA  +   +   +  + +V+      
Sbjct: 121 SKATHFFACLMVAGGALISTTWIIASNSWMQTPAGAVADASGI-YHVVDWWQVIFTASFP 179

Query: 186 VKFLHTVASAYTCGAMFILGVSSYYLLQGRDIEFARRSFAIAATFGMAAIISVIVLGDES 245
            +  H V +++   A  I GVS++++ +G+ +  +R +F++A    +      I +GD  
Sbjct: 180 YRLAHMVCASFLTCAFVIAGVSAFHMWRGQHVTASRTAFSMALWLALVLAPLQIFIGDLH 239

Query: 246 GYKLGDVQKVKLAAIEAEWHTEPAPAAFTLFGLPNQKEGKTDYAIKIPYLMGLIATRSFD 305
           G      Q  KLAA+E  W T   P A T+   P+    K  YA++IP+L  L  T S++
Sbjct: 240 GRNTLVHQPTKLAAMEGLWDTTRGP-AMTVIAWPDMAAQKNLYAVEIPHLASLYLTHSWN 298

Query: 306 EQVTGL 311
            +V GL
Sbjct: 299 GEVEGL 304



 Score = 78.2 bits (191), Expect = 6e-19
 Identities = 45/125 (36%), Positives = 65/125 (52%)

Query: 385 PTVWPLFWSFRIMVGCGFIMLFVFGAALLQTCRQRITHKPWVLKAALWSIPLPWIAIEAG 444
           P V  +F++FRIM G G ++L      L+   R R+ +  W    A+ + PL  +A+ AG
Sbjct: 313 PNVPIVFFAFRIMAGIGMVLLATAVTGLVLRLRGRLYNARWFQYLAMATTPLGLVAVLAG 372

Query: 445 WFVAEYGRQPWAIGEVLPVTVAVSSQTFENLITSLAIILSLYTVFIFVESYLIVTVARKG 504
           W V E GRQPW I  VL    AV+  T   + TSL I  ++Y + +    +    VA KG
Sbjct: 373 WTVTEAGRQPWIIYSVLRTADAVAPVTAGAVTTSLIIFFAVYNLLLLAFLWFAGRVAFKG 432

Query: 505 PSSLK 509
           P+  K
Sbjct: 433 PTDTK 437