Pairwise Alignments

Query, 530 a.a., cytochrome d terminal oxidase subunit 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 479 a.a., cytochrome D ubiquinol oxidase subunit I from Pseudomonas simiae WCS417

 Score =  236 bits (602), Expect = 1e-66
 Identities = 126/319 (39%), Positives = 185/319 (57%), Gaps = 11/319 (3%)

Query: 4   FMIDVVELSRLQFALTAMFHFLFVPLTIGMSCLLAIMESIYVLTGKQIYQDMTRFWGKLF 63
           F ++ ++L+R+QFA T  FH LF  +TIG++  LA++E +++ T    Y+D+  FW K+F
Sbjct: 2   FGLEALDLARIQFAFTISFHILFPAITIGLASYLAVLEGLWLKTHNDTYRDLYHFWSKIF 61

Query: 64  GINFALGVTTGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEALVAFFLESTFVGLFFFGWS 123
            +NF +GV +GL M +QFGTNWS +S + G + G  L  E L AFFLE+ F+G+  FGW+
Sbjct: 62  AVNFGMGVVSGLVMAYQFGTNWSRFSDFAGAVTGPLLTYEVLTAFFLEAGFLGVMLFGWN 121

Query: 124 RLSKRQHLLITWLVALGSSFSALWILVANGWMQNPVGAEFNYQTMRMEMTSFAEVVLNPV 183
           ++ +  H   T +VA+G+  S  WIL +N WMQ P G  F     R+  T +  VV NP 
Sbjct: 122 KVGRNLHFFSTVMVAVGTLISTFWILSSNSWMQTPQG--FEIIDGRVIPTDWFAVVFNPS 179

Query: 184 AQVKFLHTVASAYTCGAMFILGVSSYYLLQGRDIEFARRSFAIAATFGMAAIISVI--VL 241
              +  H   +A+   A F+   ++++LL+G+D    R+  ++A    MA I++ I  V+
Sbjct: 180 FPYRLAHMATAAFVATAFFVGSSAAWHLLRGKDNPAIRKMLSMA--MWMALIVAPIQAVI 237

Query: 242 GDESGYKLGDVQKVKLAAIEAEWH---TEPAPAAFTLFGLPNQKEGKTDYAIKIPYLMGL 298
           GD  G      Q  K+AAIE  W     EP P    LFG P+ K  KT YA++IPYL  L
Sbjct: 238 GDFHGLNTLKHQPAKIAAIEGHWENIGNEPTP--LILFGWPDMKAEKTKYAVEIPYLGSL 295

Query: 299 IATRSFDEQVTGLHDLRHE 317
           I T S D+QV  L +   E
Sbjct: 296 ILTHSLDKQVPALKEFPPE 314



 Score = 77.8 bits (190), Expect = 8e-19
 Identities = 50/162 (30%), Positives = 78/162 (48%), Gaps = 2/162 (1%)

Query: 347 KFEQTKHDLGYGLLLKRYTDTITDANEAQIQQAADDSMPTVWPLFWSFRIMVGCGFIMLF 406
           K E+TK+ +    L         D     +++   +  P    +FWSFR+MVG GF+M+F
Sbjct: 279 KAEKTKYAVEIPYLGSLILTHSLDKQVPALKEFPPEDRPNSTIVFWSFRVMVGLGFLMIF 338

Query: 407 VFGAAL-LQTCRQRITHKPWVLKAALWSIPLPWIAIEAGWFVAEYGRQPWAIGEVLPVTV 465
               +L L+   +  T KP+ L  ALW  P   IAI AGWF  E GRQPW +  ++    
Sbjct: 339 TGLFSLWLRRGDKMYTSKPF-LYLALWMGPSGLIAILAGWFTTEIGRQPWVVYGLMRTAD 397

Query: 466 AVSSQTFENLITSLAIILSLYTVFIFVESYLIVTVARKGPSS 507
           A S  +   +  +L + + +Y          ++ + RKGP +
Sbjct: 398 ASSGHSLAQMTITLVLFVVVYFALFGAGLGYMMRLVRKGPQT 439