Pairwise Alignments

Query, 530 a.a., cytochrome d terminal oxidase subunit 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 537 a.a., Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) from Variovorax sp. SCN45

 Score =  607 bits (1564), Expect = e-178
 Identities = 292/506 (57%), Positives = 386/506 (76%), Gaps = 4/506 (0%)

Query: 6   IDVVELSRLQFALTAMFHFLFVPLTIGMSCLLAIMESIYVLTGKQIYQDMTRFWGKLFGI 65
           +D+V LSRLQFA+TA++HFLFVPLT+G+S ++AIME++YV+TG+ I++DMT+FWG LFGI
Sbjct: 3   LDIVALSRLQFAVTALYHFLFVPLTLGLSIIIAIMETVYVMTGRVIWRDMTKFWGVLFGI 62

Query: 66  NFALGVTTGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEALVAFFLESTFVGLFFFGWSRL 125
           NFA+GV TG+ MEFQFG NWSYYSHYVGDIFGAPLAIE L+AFF+E+TFVGLFFFGW +L
Sbjct: 63  NFAMGVATGIVMEFQFGMNWSYYSHYVGDIFGAPLAIEGLMAFFMEATFVGLFFFGWDKL 122

Query: 126 SKRQHLLITWLVALGSSFSALWILVANGWMQNPVGAEFNYQTMRMEMTSFAEVVLNPVAQ 185
           SK  HL+ TW VA+GS+FSALWIL+ANGWMQNPVGA FN QTMRME+T FA V+ NPVAQ
Sbjct: 123 SKVGHLIATWAVAIGSNFSALWILIANGWMQNPVGAAFNPQTMRMEVTDFAAVLTNPVAQ 182

Query: 186 VKFLHTVASAYTCGAMFILGVSSYYLLQGRDIEFARRSFAIAATFGMAAIISVIVLGDES 245
            KF+HTV++ Y C A+F+LGVS++YLL+GR +E A+RS  +AA+FG+AA +SV VLGDES
Sbjct: 183 AKFVHTVSAGYVCAAVFVLGVSAWYLLKGRHLELAKRSMTVAASFGLAAALSVAVLGDES 242

Query: 246 GYKLGDVQKVKLAAIEAEWHTEPAPAAFTLFGLPNQKEGKTDYAIKIPYLMGLIATRSFD 305
           GY  G+ QK+KLAAIEA W T+PAPAAFT+ G P+Q+  +T YAI IP +MGLI TRS D
Sbjct: 243 GYLSGEHQKMKLAAIEAMWETQPAPAAFTVIGFPDQEARETHYAIHIPGVMGLIGTRSLD 302

Query: 306 EQVTGLHDLRHEHLLRIRNGMVAYQLLERL-QAGDASVETQ---RKFEQTKHDLGYGLLL 361
             + G+ +L     +RIR G+ AY  L+++ +AG     TQ     FE    ++GY LLL
Sbjct: 303 TVMPGIDELVKRAEVRIREGLKAYDALQKIREAGGTGKVTQGVRGDFEDNGINMGYALLL 362

Query: 362 KRYTDTITDANEAQIQQAADDSMPTVWPLFWSFRIMVGCGFIMLFVFGAALLQTCRQRIT 421
           KRY D    A + QI +AA D++P V PLFW FR+MVG G +++ +     + + R+++ 
Sbjct: 363 KRYVDDPRQATDEQITKAAWDTVPQVAPLFWLFRVMVGIGVLLIVLTATFFVLSARRKLD 422

Query: 422 HKPWVLKAALWSIPLPWIAIEAGWFVAEYGRQPWAIGEVLPVTVAVSSQTFENLITSLAI 481
              W+LK A+++IPLPWIAIE+GW VAE+GRQPW I  VLP  VAVS+   + L+ ++A 
Sbjct: 423 SYRWLLKVAVFAIPLPWIAIESGWLVAEFGRQPWVIEGVLPTAVAVSNLGVKTLLLTIAG 482

Query: 482 ILSLYTVFIFVESYLIVTVARKGPSS 507
            +++YT  + +E  L++   RKGP +
Sbjct: 483 FIAIYTTLLIIEMKLMLKAIRKGPEA 508