Pairwise Alignments

Query, 530 a.a., cytochrome d terminal oxidase subunit 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 454 a.a., Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  211 bits (538), Expect = 4e-59
 Identities = 114/313 (36%), Positives = 168/313 (53%), Gaps = 3/313 (0%)

Query: 6   IDVVELSRLQFALTAMFHFLFVPLTIGMSCLLAIMESIYVLTGKQIYQDMTRFWGKLFGI 65
           +D + LSR+QFA    FH LF  +TI M   L      Y+ T    +++   FW K+F +
Sbjct: 1   MDALILSRIQFAANISFHILFPTITIAMGWFLLFFRIRYLKTRDPAWEEAYYFWTKVFAL 60

Query: 66  NFALGVTTGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEALVAFFLESTFVGLFFFGWSRL 125
           +FALGV +G+ M FQFGTNW  +    G+I G  L  E L AFFLE++F+G+  FG  R+
Sbjct: 61  SFALGVVSGIVMSFQFGTNWPGFMERAGNIAGPLLGYEVLTAFFLEASFLGIMLFGRGRV 120

Query: 126 SKRQHLLITWLVALGSSFSALWILVANGWMQNPVGAEFNYQTMRMEMTSFAEVVLNPVAQ 185
           S+R HL  T+LVA G++ SA WIL  N WMQ P G  F     +     +  VV NP   
Sbjct: 121 SERVHLAATFLVAFGTTMSAFWILSLNSWMQTPAG--FEIVDGKFIPVDWFAVVFNPSFP 178

Query: 186 VKFLHTVASAYTCGAMFILGVSSYYLLQGRDIEFARRSFAIAATFGMAAIISVIVLGDES 245
            +  H + ++    +  I G+ ++ L++G       ++   A      A+    + GD  
Sbjct: 179 YRLAHKLLASALTASFLIAGLCAWQLIKGSATGGTHKALRTAIIAASVAMPLQFLAGDMH 238

Query: 246 GYKLGDVQKVKLAAIEAEWHTEPAPAAFTLFGLPNQKEGKTDYAIKIPYLMGLIATRSFD 305
           G    + Q  K+AA+E  WHTE + A  TLFG+P++  G T YA+KIP +  LI     D
Sbjct: 239 GLNTLEHQPAKIAALEGIWHTEKS-APLTLFGIPDEAAGTTHYAVKIPKMASLILAHDMD 297

Query: 306 EQVTGLHDLRHEH 318
            ++ GL++  + H
Sbjct: 298 AELKGLNEFPNAH 310



 Score = 56.2 bits (134), Expect = 2e-12
 Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 6/112 (5%)

Query: 385 PTVWPLFWSFRIMVGCGFIMLFV--FGAALLQTCRQRITHKPWVLKAALWSIP----LPW 438
           P V P+FW+FR+MVG G +ML V    A LL   R++      + K AL+ +       W
Sbjct: 311 PPVAPIFWAFRVMVGVGSLMLVVAWVSAWLLWRRRRQPRGSMDLPKPALYVLAGMTFSGW 370

Query: 439 IAIEAGWFVAEYGRQPWAIGEVLPVTVAVSSQTFENLITSLAIILSLYTVFI 490
           +A  +GW+V E GRQP+ +   L      ++     + T+LA  L +Y + +
Sbjct: 371 LATLSGWYVTEIGRQPFLVYGHLRTAEVATNLPSPMIATTLAAYLIVYGLLL 422