Pairwise Alignments

Query, 316 a.a., D-alanyl-D-alanine endopeptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 401 a.a., Murein-DD-endopeptidase (EC 3.4.99.-) from Variovorax sp. SCN45

 Score =  210 bits (535), Expect = 4e-59
 Identities = 113/252 (44%), Positives = 162/252 (64%), Gaps = 2/252 (0%)

Query: 34  AGVKKTVKKQELSANSALVIDLKTNEIIYSNNPDAVKPIASVTKLMTAIVTLDAKLPMDA 93
           AG+  T    +L ++ ALVID  T+E+++S N  AV PIAS+TKLMT ++  +A LP + 
Sbjct: 130 AGLHGTEDSLDLKSSVALVIDQDTHEVLFSKNDHAVLPIASLTKLMTGLLISEAHLPNEE 189

Query: 94  KLPITIKDAKEMKGVHSRVKIGSEISRKDMLLLTLMSSENRAAASLAHHYPGGYKAFIKA 153
            + IT  D    K   SR+ +G+ +SR ++L L LMSSENRAA +L   YPGG   F+  
Sbjct: 190 LITITQDDVDTEKRSSSRLTVGTTLSRGELLHLALMSSENRAAHALGRTYPGGLSTFVSI 249

Query: 154 MNAKAKALGMKNTRFVEPTGLSAKNVSTARDLVVLLKASKKYPLLGKLSATDKKTVTFSK 213
           MNAKAK LGMK+TR+VEPTGLS++N S+A+DL +L+ A+     +  LS + +  V    
Sbjct: 250 MNAKAKMLGMKDTRYVEPTGLSSRNQSSAQDLALLVNAAYSDATVRSLSTSPEYQVEVG- 308

Query: 214 PRYTLDFRNTNRLVHNDNWKIDLTKTGFTNAAGHCLVMRTQMGRRQVAFVVLDTKGKLSP 273
               L F  TNRLV + +W+I + KTG+ + AG CLVM+ ++  R++  V LD+ GK S 
Sbjct: 309 -NRMLQFNTTNRLVKSPDWEIGVQKTGYISEAGQCLVMQAKVAGRKLIMVFLDSAGKFSR 367

Query: 274 VGDANRLRTWIE 285
           + DA R+R W+E
Sbjct: 368 IADAERVRRWVE 379