Pairwise Alignments

Query, 217 a.a., outer membrane protein W from Vibrio cholerae E7946 ATCC 55056

Subject, 232 a.a., membrane protein from Pseudomonas simiae WCS417

 Score =  177 bits (448), Expect = 2e-49
 Identities = 96/232 (41%), Positives = 133/232 (57%), Gaps = 15/232 (6%)

Query: 1   MKQTICGLAVLAALSSAPVF-AHQEGDFIVRAGIASVVPNDSSDKVLNTQSELA------ 53
           M +++ G ++ A    APV  AH+ GD +VRAG  +V P   S  V   Q  LA      
Sbjct: 1   MNKSLLGASLFALALVAPVVHAHEAGDILVRAGAITVNPKADSGHVKVDQGPLAGANLGG 60

Query: 54  ---VNSNTQLGLTLGYMFTDNISFEVLAATPFSHKISTSGGELGSL-GDIGETKHLPPTF 109
              ++S+TQLGL   YM T+++  E+LAATPF H +      LG+  G +G  KHLPPT 
Sbjct: 61  KATMSSDTQLGLNFAYMLTNHVGIELLAATPFEHDVKIKNTALGAANGKLGTLKHLPPTL 120

Query: 110 MVQYYFGEANSTFRPYVGAGLNYTTFFDESFNGTGTNAGLSDLKLDDSWGLAANVGFDYM 169
            + YY  +  S F+PYVGAG+NYT  +DE        AG S+ K ++SWG AA +G DYM
Sbjct: 121 SIVYYPLDNKSAFQPYVGAGINYTWIYDEHVGSRAQGAGFSNFKAENSWGWAAQIGADYM 180

Query: 170 LNDSWFLNASVWYANIETTATYKAGADAKST----DVEINPWVFMIAGGYKF 217
           +ND W +NA   Y +I T AT    A  + T    +V+++P V+M+  GYKF
Sbjct: 181 INDKWMINAQARYIDISTKATVDNNALGQGTRAKVNVDVDPMVYMVGIGYKF 232