Pairwise Alignments

Query, 217 a.a., outer membrane protein W from Vibrio cholerae E7946 ATCC 55056

Subject, 223 a.a., Outer membrane protein W precursor from Alteromonas macleodii MIT1002

 Score =  197 bits (500), Expect = 2e-55
 Identities = 103/219 (47%), Positives = 145/219 (66%), Gaps = 9/219 (4%)

Query: 5   ICGLAVLAALSSAPVFAHQEGDFIVRAGIASVVPNDSSDKVLNTQSELA----VNSNTQL 60
           +  L  +A+ SSA  F  ++GD IVR G A+V P++SS  + N   +L     +++NTQL
Sbjct: 8   LTALPFIASASSAVAF--EKGDIIVRGGFATVAPDESSSNI-NVGDDLGFGLTIDNNTQL 64

Query: 61  GLTLGYMFTDNISFEVLAATPFSHKISTS-GGELGSLGDIGETKHLPPTFMVQYYFGEAN 119
           GLT  Y  TD ++ EVLAATPF+H ++ +    LG+   +GE  HLPPT  V YYF + +
Sbjct: 65  GLTAAYFITDRVNIEVLAATPFTHDVNFAIDNPLGTGNQLGEVTHLPPTVTVNYYFNDPS 124

Query: 120 STFRPYVGAGLNYTTFFDESFNGTGTNAGLSDLKLDDSWGLAANVGFDYMLNDSWFLNAS 179
           S F+PYVGAGLNYT  +DE F G    AGLSDL LD+S+GLAA VG DY L++ WFLNA+
Sbjct: 125 SAFQPYVGAGLNYTFIYDEQFTGANEEAGLSDLSLDNSFGLAAQVGIDYQLSERWFLNAA 184

Query: 180 VWYANIETTATYKAGADAKSTD-VEINPWVFMIAGGYKF 217
           V + +I+T A++  G    S   +EI+P+V+ I+ G++F
Sbjct: 185 VRWIDIDTEASFNLGDTRGSVSAIEIDPFVYAISLGFRF 223