Pairwise Alignments

Query, 217 a.a., outer membrane protein W from Vibrio cholerae E7946 ATCC 55056

Subject, 228 a.a., outer membrane protein from Agrobacterium fabrum C58

 Score = 99.4 bits (246), Expect = 5e-26
 Identities = 65/210 (30%), Positives = 108/210 (51%), Gaps = 9/210 (4%)

Query: 8   LAVLAALSSAPVFAHQEGDFIVRAGIASVVPNDSSDKVLNTQSELAVNSNTQLGLTLGYM 67
           LA LA   +A         +++R     V+ NDS        + L+ +      L + Y 
Sbjct: 28  LAPLATAPTAEQAIAAASPWMLRVRGLGVITNDSGSVDGLPGAGLSYSDTVIPELDISYF 87

Query: 68  FTDNISFEVLAATPFSHKISTSGGELGSLGDIGETKHLPPTFMVQYYFGEANSTFRPYVG 127
           FTDN + E++  T ++ KI+  G   G+   +G+T  LPPT  +QY+F +  + F+PY+G
Sbjct: 88  FTDNFAAELILGTTYA-KINGEGVLAGT--PVGKTWLLPPTLTLQYHFTDFGA-FKPYIG 143

Query: 128 AGLNYTTFFDESFNGTGTNAGLSDLKLDDSWGLAANVGFDYMLNDSWFLNASVWYANIET 187
           AG+NY+ F+++S        G S+L + +  G A  VGFDYML++ W +N  V    ++T
Sbjct: 144 AGVNYSLFYNQS-----EKPGFSNLDVKNKLGAAVQVGFDYMLDEHWGVNFDVKKIFLKT 198

Query: 188 TATYKAGADAKSTDVEINPWVFMIAGGYKF 217
             T + G    S   +++PW+      Y+F
Sbjct: 199 DWTAELGGTPISGKAKLDPWLIGAGITYRF 228