Pairwise Alignments

Query, 426 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 439 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  322 bits (825), Expect = 1e-92
 Identities = 185/412 (44%), Positives = 260/412 (63%), Gaps = 9/412 (2%)

Query: 18  NIVQSLSEHIASIEFDTSGNVISANPLFLNAVGYRLEELTGKHHRIFCSPAECQSQQYQQ 77
           +++ ++   +A IEFD  GNV+ AN  FL A+GYR E++ G+ HR+FC+PA  +S +Y Q
Sbjct: 22  SLLDAIERSMAVIEFDLHGNVLRANANFLQAMGYRAEQIEGQSHRMFCTPAFARSAEYNQ 81

Query: 78  FWTSLAQGKSHSGTFMRYKKDGSLLVLEATYFPIKTD-GKVSSVMKIASDVTEQYLHAES 136
            W++L  G+  SGTF R   DG  + LEA+Y P++ D G V  V+K A DVT + L AES
Sbjct: 82  LWSNLRNGQYQSGTFERVAGDGQSVWLEASYNPVRDDAGHVIKVVKYAMDVTPR-LQAES 140

Query: 137 QRDL-LTALNQNFAVIEFEPDGTIISANSAFLKTMGYSLDQIKGKHHRLFCFDEFYQQ-- 193
           + +  L A+++  AVIEF  DGTII+AN+ FL+ MGY+L Q++G+HHRLFC         
Sbjct: 141 EANAKLAAISRAMAVIEFNLDGTIITANANFLQRMGYTLAQVQGQHHRLFCTKALANSPA 200

Query: 194 HPTFWKSLAAGQAYSGRFLRKNSYGSQVWIQASYSPVKDQNNKVYKIVKFASDITAEVLR 253
           +  FW+ L  G+ +SG+F R +  G  VW++A+Y+PV D   ++ K+VKFASD+TA V  
Sbjct: 201 YEDFWRRLNQGEMFSGQFERVDKNGQAVWLEANYNPVYDAGGRLCKVVKFASDVTAMV-- 258

Query: 254 EQQVTDAANIA--YSTSVETSQVAQGGNHVLQDSVRLAEKMVGNIEQSLQQIEQLVVLSK 311
           +Q   DAA+ A  Y  S+ T  +A+ G  V+Q +      +  +I+ S Q I +L   S+
Sbjct: 259 QQHTADAASAAQAYHISLNTRDIAEKGAEVIQQTASGMRDIAADIDGSSQLIAKLGERSQ 318

Query: 312 DVSEIVKTISGIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLASRTSKATEEINQ 371
            ++ IV TI GIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLA+RTS +T EI+ 
Sbjct: 319 QITAIVNTIRGIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLAARTSGSTAEISS 378

Query: 372 VVNKNLSLTEAVTSSISQVSQIANETNGRIVEVSTIMEQIYQGAENVSSAVS 423
           ++      T     S+      A +         T++ QI +G  +   AVS
Sbjct: 379 MIAMIQDETRQAIHSMDGTRDRAAQGVDLANRAGTVILQIREGTSDAVQAVS 430