Pairwise Alignments

Query, 426 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  112 bits (279), Expect = 4e-29
 Identities = 65/165 (39%), Positives = 99/165 (60%), Gaps = 3/165 (1%)

Query: 233 QNNKVYKIVKFASDITAEVLREQQVTDAANIAYSTSVETSQVAQGGNHVLQDSVRLAEKM 292
           QNN++ +     +++T+ V   ++V   A      S   +  A  G  ++Q++V   E+M
Sbjct: 294 QNNEIEQAATAVNEMTSAV---EEVARNAVSTSEASRNATTSAGDGRDLVQETVSAIERM 350

Query: 293 VGNIEQSLQQIEQLVVLSKDVSEIVKTISGIADQTNLLALNAAIEAARAGEQGRGFAVVA 352
            G+++ +   I  L   S+D+ +++  I G+ADQTNLLALNAAIEAARAGE GRGFAVVA
Sbjct: 351 SGDVQATATLIGDLANESRDIGKVLDVIRGLADQTNLLALNAAIEAARAGEAGRGFAVVA 410

Query: 353 DEVRQLASRTSKATEEINQVVNKNLSLTEAVTSSISQVSQIANET 397
           DEVR LA RT ++T EI +++    + TE    S+   ++ A  T
Sbjct: 411 DEVRALAHRTQQSTSEIERMIGSIQAGTEHAVDSMRNSTERAEST 455



 Score = 26.9 bits (58), Expect = 0.002
 Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 17/100 (17%)

Query: 332 LNAAIEAARAGEQGRGFAVVA---DEVRQL-------ASRTSKATEEINQVVNKNLSLTE 381
           L   I+   + E GR  A +A   D++R         A++ + A EE+N V +++     
Sbjct: 233 LTRPIKVDGSDEAGRLLAAMAKMQDKLRDTLQRIAGSATQLASAAEELNAVTDES---AR 289

Query: 382 AVTSSISQVSQIANETNGRIVEVSTIMEQIYQGAENVSSA 421
            +T   +++ Q A   N    E+++ +E++ + A + S A
Sbjct: 290 GLTQQNNEIEQAATAVN----EMTSAVEEVARNAVSTSEA 325



 Score = 26.2 bits (56), Expect = 0.003
 Identities = 20/96 (20%), Positives = 45/96 (46%), Gaps = 2/96 (2%)

Query: 331 ALNAAIEAARAGEQGRGFAVV-ADEVRQLASRTSKATEEINQVVNKNLSLTEAVTSSISQ 389
           AL AA E A  G   R   V  +DE  +L +  +K  +++   + +       + S+  +
Sbjct: 221 ALEAAEEVAE-GNLTRPIKVDGSDEAGRLLAAMAKMQDKLRDTLQRIAGSATQLASAAEE 279

Query: 390 VSQIANETNGRIVEVSTIMEQIYQGAENVSSAVSQL 425
           ++ + +E+   + + +  +EQ       ++SAV ++
Sbjct: 280 LNAVTDESARGLTQQNNEIEQAATAVNEMTSAVEEV 315



 Score = 24.6 bits (52), Expect = 0.008
 Identities = 30/157 (19%), Positives = 57/157 (36%), Gaps = 15/157 (9%)

Query: 266 STSVETSQVAQGGNHVLQDSVRLAEKMVGNIEQSLQQIEQLVVLSKDVSEIVKTISGIAD 325
           S ++  +Q  +    V + ++    K+ G+ E        L  ++K   ++  T+  IA 
Sbjct: 213 SITLPIAQALEAAEEVAEGNLTRPIKVDGSDEAG----RLLAAMAKMQDKLRDTLQRIAG 268

Query: 326 QTNLLALNAAIEAARAGEQGRGFAVVADEVRQLASRTSKATEEINQVVNKNLSLTEAVTS 385
               LA  A    A   E  RG     +E+ Q A+            VN+  S  E V  
Sbjct: 269 SATQLASAAEELNAVTDESARGLTQQNNEIEQAAT-----------AVNEMTSAVEEVAR 317

Query: 386 SISQVSQIANETNGRIVEVSTIMEQIYQGAENVSSAV 422
           +    S+ +        +   ++++     E +S  V
Sbjct: 318 NAVSTSEASRNATTSAGDGRDLVQETVSAIERMSGDV 354