Pairwise Alignments

Query, 426 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 529 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  114 bits (286), Expect = 5e-30
 Identities = 122/486 (25%), Positives = 208/486 (42%), Gaps = 98/486 (20%)

Query: 29  SIEFDTSGNVISA----------NPLFLNAVGYRLEELTGKHHRIFCSPAECQSQQYQQF 78
           +IE  +S N++S           NP FL   G+  EEL G+ H +   P +     +   
Sbjct: 15  NIELSSSTNILSTTTPDSHITYVNPDFLKISGFAEEELIGQPHNMVRHP-DMPPAAFAHM 73

Query: 79  WTSLAQGKSHSGTFMRYKKDGSLLVLEATYFPIKTDGKVSSVMKIASD--------VTEQ 130
           W++L  G+S  G      K+G    + A   PI  +GKV     + +           + 
Sbjct: 74  WSTLKSGRSWMGLVKNRCKNGDHYWVSAFAMPIIKNGKVVEYQSVRTKPEPSHVQAAEKA 133

Query: 131 YLHAESQRDLLTALNQNF----------------AVIEFEPDGTIISANSAFLKTMGYSL 174
           Y    + +++L  +   F                A++       ++S    FL  +  S+
Sbjct: 134 YAQLRNGKNILPKIRLGFHWKLILLVWGSLFASIAIVSLIYPSALMSI--LFLTLLVGSI 191

Query: 175 DQIKGKHHRLFCFDEFYQQHPTFWKSLAAGQAYSGRFLRKNSYG--------SQVWIQAS 226
             + G  + L       Q +     +  +   Y+G   R + +G        +Q    A 
Sbjct: 192 TTL-GITYLLVPMKRLIQSYCKDSDNPLSQVLYTG---RSDEFGQLEFALRMAQAETSAV 247

Query: 227 YSPVKDQNNKVYKIVKFASDI-----TAEVLREQQVTDAANIAYS---TSVETSQVAQGG 278
              + D +N   ++ KFA+D+      + +L  +Q  +   +A +    +    +VA G 
Sbjct: 248 IGRIGDASN---QLNKFANDLLHNIEKSNILTSEQQAETEQVATAINEMAASIQEVATGA 304

Query: 279 NHVLQDS-------------VRLAEKMVGNIE----QSLQQIEQLVVLSKDVSEIVKTIS 321
            H    S             V  A + +  +E    Q+ Q I +L   S D+S++++ I 
Sbjct: 305 KHAANSSESANHETISGQQIVSQASQSITELEHEVSQAKQVIHELEEHSNDISKVLEVIR 364

Query: 322 GIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLASRTSKATEEINQVVNK---NLS 378
            IADQTNLLALNAAIEAARAGE GRGFAVVADEVR LA+RT ++T +I ++++       
Sbjct: 365 SIADQTNLLALNAAIEAARAGESGRGFAVVADEVRGLAARTQQSTMDIQRMIDTLQGRAK 424

Query: 379 LTEAVTS--------SISQVSQIA----------NETNGRIVEVSTIMEQIYQGAENVSS 420
           L  AV          S+ Q  Q A          ++  G  V+++T ++Q    ++ ++ 
Sbjct: 425 LAVAVMEHSSQQALLSVEQAQQAADALTGIGKRVSDITGMSVQMATAVDQQSAVSDEINH 484

Query: 421 AVSQLK 426
           ++S ++
Sbjct: 485 SISNIR 490



 Score = 37.4 bits (85), Expect = 1e-06
 Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 25/129 (19%)

Query: 117 VSSVMKIASDVTEQYLHAESQRDLLTALNQNFAVIEFEPDGTIISANSAFLKTMGYSLDQ 176
           + S+M+    VT   +   S  ++L+            PD  I   N  FLK  G++ ++
Sbjct: 1   MESIMRKNLPVTGHNIELSSSTNILSTTT---------PDSHITYVNPDFLKISGFAEEE 51

Query: 177 IKGKHHRLFCFDEFYQQHPT--------FWKSLAAGQAYSGRFLRKNSYGSQVWIQASYS 228
           + G+ H +        +HP          W +L +G+++ G    +   G   W+ A   
Sbjct: 52  LIGQPHNMV-------RHPDMPPAAFAHMWSTLKSGRSWMGLVKNRCKNGDHYWVSAFAM 104

Query: 229 PVKDQNNKV 237
           P+  +N KV
Sbjct: 105 PI-IKNGKV 112