Pairwise Alignments

Query, 426 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 439 a.a., Methyl-accepting chemotaxis transducer/sensory box protein from Pseudomonas putida KT2440

 Score =  335 bits (858), Expect = 2e-96
 Identities = 182/407 (44%), Positives = 258/407 (63%), Gaps = 6/407 (1%)

Query: 22  SLSEHIASIEFDTSGNVISANPLFLNAVGYRLEELTGKHHRIFCSPAECQSQQYQQFWTS 81
           ++   +A IEF   G ++ AN  F  A+GY  +EL GKHHR+FC P   +S +YQQ W  
Sbjct: 29  AIGRSMAMIEFAPDGTILDANERFCQAMGYSADELRGKHHRLFCEPDYAKSAEYQQLWRE 88

Query: 82  LAQGKSHSGTFMRYKKDGSLLVLEATYFPIKTDGK-VSSVMKIASDVTEQYLHAESQRDL 140
           L QGK+ SGTF R  K G  + LEA+Y P+  + + V+SV+K+ASD+T++ +       L
Sbjct: 89  LGQGKAISGTFERIDKAGREVWLEASYMPVLDEHRQVTSVIKVASDITQRVVQEHESESL 148

Query: 141 LTALNQNFAVIEFEPDGTIISANSAFLKTMGYSLDQIKGKHHRLFCF--DEFYQQHPTFW 198
           L A++++ AVIEF P G +I AN  FL TMGY LD++ G+HH LFC   +    Q+  FW
Sbjct: 149 LKAISRSMAVIEFTPQGRVIKANQNFLDTMGYRLDEVVGRHHGLFCLAHERESAQYREFW 208

Query: 199 KSLAAGQAYSGRFLRKNSYGSQVWIQASYSPVKDQNNKVYKIVKFASDITAEVLREQQVT 258
            SL  G+ +S RF R N  G  V+++ASY+P+ D   ++ K+VKFASDIT +V  +Q   
Sbjct: 209 ASLNRGEYHSHRFERVNKQGQTVFLEASYNPIFDSKGRLCKVVKFASDITHQVCTQQS-- 266

Query: 259 DAANIAYSTSVETSQVAQGGNHVLQDSVRLAEKMVGNIEQSLQQIEQLVVLSKDVSEIVK 318
            AA+ A+++SV+T   A+ G  V+Q +V++ E++   +  + + I+ +   S  + +IV 
Sbjct: 267 -AAHAAHASSVQTDACARKGTEVVQQAVQVIEQISQELNDAARSIDAVNRQSDVIGQIVL 325

Query: 319 TISGIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLASRTSKATEEINQVVNKNLS 378
           TI GIADQTNLLALNAAIEAARAGE GRGFAVVADEVR LA+RTSKAT EI  VV +N  
Sbjct: 326 TIRGIADQTNLLALNAAIEAARAGEHGRGFAVVADEVRNLAARTSKATLEIVDVVRQNHD 385

Query: 379 LTEAVTSSISQVSQIANETNGRIVEVSTIMEQIYQGAENVSSAVSQL 425
           L+    +S+               E  T++ +I QG+ +V  A+SQ+
Sbjct: 386 LSLLAVASMQSSLNRTGHGVALANEAGTVIMEIQQGSRHVVDAISQI 432



 Score =  117 bits (294), Expect = 5e-31
 Identities = 53/118 (44%), Positives = 81/118 (68%), Gaps = 2/118 (1%)

Query: 141 LTALNQNFAVIEFEPDGTIISANSAFLKTMGYSLDQIKGKHHRLFCFDEFYQ--QHPTFW 198
           L A+ ++ A+IEF PDGTI+ AN  F + MGYS D+++GKHHRLFC  ++ +  ++   W
Sbjct: 27  LAAIGRSMAMIEFAPDGTILDANERFCQAMGYSADELRGKHHRLFCEPDYAKSAEYQQLW 86

Query: 199 KSLAAGQAYSGRFLRKNSYGSQVWIQASYSPVKDQNNKVYKIVKFASDITAEVLREQQ 256
           + L  G+A SG F R +  G +VW++ASY PV D++ +V  ++K ASDIT  V++E +
Sbjct: 87  RELGQGKAISGTFERIDKAGREVWLEASYMPVLDEHRQVTSVIKVASDITQRVVQEHE 144



 Score =  106 bits (265), Expect = 1e-27
 Identities = 52/121 (42%), Positives = 79/121 (65%), Gaps = 1/121 (0%)

Query: 17  DNIVQSLSEHIASIEFDTSGNVISANPLFLNAVGYRLEELTGKHHRIFCSPAECQSQQYQ 76
           +++++++S  +A IEF   G VI AN  FL+ +GYRL+E+ G+HH +FC   E +S QY+
Sbjct: 146 ESLLKAISRSMAVIEFTPQGRVIKANQNFLDTMGYRLDEVVGRHHGLFCLAHERESAQYR 205

Query: 77  QFWTSLAQGKSHSGTFMRYKKDGSLLVLEATYFPI-KTDGKVSSVMKIASDVTEQYLHAE 135
           +FW SL +G+ HS  F R  K G  + LEA+Y PI  + G++  V+K ASD+T Q    +
Sbjct: 206 EFWASLNRGEYHSHRFERVNKQGQTVFLEASYNPIFDSKGRLCKVVKFASDITHQVCTQQ 265

Query: 136 S 136
           S
Sbjct: 266 S 266