Pairwise Alignments

Query, 426 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 521 a.a., putative aerotaxis receptor from Pseudomonas putida KT2440

 Score =  105 bits (262), Expect = 3e-27
 Identities = 59/171 (34%), Positives = 96/171 (56%)

Query: 255 QQVTDAANIAYSTSVETSQVAQGGNHVLQDSVRLAEKMVGNIEQSLQQIEQLVVLSKDVS 314
           Q+V +        + E +++   G  +  ++    E++   + ++ Q + QL   S ++ 
Sbjct: 293 QEVANHVQRTADATQEANRLTSQGRQIAGETREAIERLSAAVGETGQTVTQLAKDSDEIG 352

Query: 315 EIVKTISGIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLASRTSKATEEINQVVN 374
            +V  I GIADQTNLLALNAAIEAARAGE GRGFAVVADEVRQLA RT+++T +I+ ++ 
Sbjct: 353 GVVDVIKGIADQTNLLALNAAIEAARAGEMGRGFAVVADEVRQLAQRTAESTGQIHGLIA 412

Query: 375 KNLSLTEAVTSSISQVSQIANETNGRIVEVSTIMEQIYQGAENVSSAVSQL 425
           K          ++    + A E   R+++    +  I +   N++   +Q+
Sbjct: 413 KLQQTASNAVLTMETGHRQAQEGVDRVMQADEALVGISEAVANITDMATQI 463



 Score = 42.4 bits (98), Expect = 3e-08
 Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 16/108 (14%)

Query: 157 GTIISANSAFLKTMGYSLDQIKGKHHRLFCFDEFYQQHPT--------FWKSLAAGQAYS 208
           G I   N AF++  G++ +++ G  H L        +HP          W++L  GQ + 
Sbjct: 28  GVITYCNDAFIEISGFTREELTGAPHNLV-------RHPDVPPAVFAHMWQTLKQGQPWM 80

Query: 209 GRFLRKNSYGSQVWIQASYSPVKDQNNKVYKIVKFASDITAEVLREQQ 256
           G    +   G   W+ A  +P+ D NN+V          TAE +R  +
Sbjct: 81  GIVKNRCKSGDHYWVNAYVTPIFD-NNQVVGFESVRVKPTAEQIRRAE 127



 Score = 32.3 bits (72), Expect = 4e-05
 Identities = 28/179 (15%), Positives = 68/179 (37%), Gaps = 21/179 (11%)

Query: 233 QNNKVYKIVKFASDITAEVLREQQVTDAANIAYSTSVETSQVAQGGNHVLQDSVRLAEKM 292
           Q   + ++++ A   T++ L  Q  TD+  +                       RL   M
Sbjct: 194 QQRGLKRLLRLAEQTTSDPLIAQMFTDSRGV---------------------QARLEMAM 232

Query: 293 VGNIEQSLQQIEQLVVLSKDVSEIVKTISGIADQTNLLALNAAIEAARAGEQGRGFAVVA 352
           +    +    + +L   ++ +S+  +    +A +++       +E  +        A   
Sbjct: 233 LSQDARMKTCLTRLQDSAEHLSDQARQSDALAHKSSTGLERQRVETEQVAAAVNQMAATT 292

Query: 353 DEVRQLASRTSKATEEINQVVNKNLSLTEAVTSSISQVSQIANETNGRIVEVSTIMEQI 411
            EV     RT+ AT+E N++ ++   +      +I ++S    ET   + +++   ++I
Sbjct: 293 QEVANHVQRTADATQEANRLTSQGRQIAGETREAIERLSAAVGETGQTVTQLAKDSDEI 351



 Score = 28.9 bits (63), Expect = 4e-04
 Identities = 23/126 (18%), Positives = 51/126 (40%), Gaps = 3/126 (2%)

Query: 259 DAANIAYSTSVETSQVAQGGNHVLQDSVRLAEKMVGNIEQSLQQIEQLVVLSKDVSEIVK 318
           +   +A  T+  T Q+      + Q +      M     Q+ + +++++   + +  I +
Sbjct: 392 EVRQLAQRTAESTGQIHGLIAKLQQTASNAVLTMETGHRQAQEGVDRVMQADEALVGISE 451

Query: 319 TISGIADQTNLLALNAAIEAARAGEQGRGFAVVA---DEVRQLASRTSKATEEINQVVNK 375
            ++ I D    +A     + A A E  R  + +A   D+  + A  ++  +EE+      
Sbjct: 452 AVANITDMATQIAAATEEQTAVADEISRNISTIAELADQTAEQAQHSALLSEELTSTAGS 511

Query: 376 NLSLTE 381
             SL E
Sbjct: 512 QYSLVE 517



 Score = 28.5 bits (62), Expect = 5e-04
 Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 4/112 (3%)

Query: 305 QLVVLSKDVSEIVKTISGIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLASRTSK 364
           ++ +LS+D + +   ++ + D    L+  A    A A +   G      E  Q+A+  ++
Sbjct: 229 EMAMLSQD-ARMKTCLTRLQDSAEHLSDQARQSDALAHKSSTGLERQRVETEQVAAAVNQ 287

Query: 365 ---ATEEINQVVNKNLSLTEAVTSSISQVSQIANETNGRIVEVSTIMEQIYQ 413
               T+E+   V +    T+      SQ  QIA ET   I  +S  + +  Q
Sbjct: 288 MAATTQEVANHVQRTADATQEANRLTSQGRQIAGETREAIERLSAAVGETGQ 339



 Score = 28.1 bits (61), Expect = 7e-04
 Identities = 18/87 (20%), Positives = 36/87 (41%)

Query: 338 AARAGEQGRGFAVVADEVRQLASRTSKATEEINQVVNKNLSLTEAVTSSISQVSQIANET 397
           A    +Q R    +A +      R    TE++   VN+  + T+ V + + + +    E 
Sbjct: 250 AEHLSDQARQSDALAHKSSTGLERQRVETEQVAAAVNQMAATTQEVANHVQRTADATQEA 309

Query: 398 NGRIVEVSTIMEQIYQGAENVSSAVSQ 424
           N    +   I  +  +  E +S+AV +
Sbjct: 310 NRLTSQGRQIAGETREAIERLSAAVGE 336