Pairwise Alignments

Query, 426 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 572 a.a., Tar ligand binding domain-containing protein from Dickeya dadantii 3937

 Score =  110 bits (276), Expect = 9e-29
 Identities = 71/198 (35%), Positives = 109/198 (55%), Gaps = 17/198 (8%)

Query: 228 SPVKDQNNKVYKIVKFASDITAEVLREQQVTDAANIAYSTSVETSQVAQGGNHVLQDSVR 287
           S  ++Q + + +      ++T+ V       D AN A   +   S  A+ G  ++   V 
Sbjct: 306 SRTEEQASALEQTASSMEELTSTVRHN---ADNANHASQLAGNASGKARQGGELVDSVV- 361

Query: 288 LAEKMVGNIEQSLQQIEQLVVLSKDVSEIVKTISGIADQTNLLALNAAIEAARAGEQGRG 347
              K +GNI QS          SK +SEI   I+GIA QTN+LALNAA+EAARAGEQGRG
Sbjct: 362 ---KTMGNIHQS----------SKKISEITNIINGIAFQTNILALNAAVEAARAGEQGRG 408

Query: 348 FAVVADEVRQLASRTSKATEEINQVVNKNLSLTEAVTSSISQVSQIANETNGRIVEVSTI 407
           FAVVA EVR LA R+++A +EI  ++ +++SL E  +  +S+  +   +    +  V+ I
Sbjct: 409 FAVVAGEVRSLAQRSAQAAKEIEGLITESVSLVETGSGQVSRAGETMQDIVNAVTSVTDI 468

Query: 408 MEQIYQGAENVSSAVSQL 425
           M +I   ++  S  + Q+
Sbjct: 469 MAEISVASQEQSKGIDQV 486



 Score = 27.7 bits (60), Expect = 0.001
 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 15/115 (13%)

Query: 308 VLSKDVSEIVKTISGIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLASRTSKATE 367
           V+ K +  +V+ I  IA     + L          + GRG      EV QL        +
Sbjct: 230 VIIKPMRSLVERIEHIASGDLTMPL---------AQWGRG------EVGQLGQYLQNMQQ 274

Query: 368 EINQVVNKNLSLTEAVTSSISQVSQIANETNGRIVEVSTIMEQIYQGAENVSSAV 422
            + + V+      EA+   I+++S   ++ + R  E ++ +EQ     E ++S V
Sbjct: 275 SLARTVSNVRHGVEAIYQGITEISAGNSDLSSRTEEQASALEQTASSMEELTSTV 329