Pairwise Alignments

Query, 426 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 590 a.a., methyl-accepting chemotaxis protein from Agrobacterium fabrum C58

 Score =  257 bits (656), Expect = 8e-73
 Identities = 165/483 (34%), Positives = 252/483 (52%), Gaps = 91/483 (18%)

Query: 12  KPSHQDNIVQSLSEHIASIEFDTSGNVISANPLFLNAVGYRLEELTGKHHRIFCSPAECQ 71
           K +   N++ ++S   A IEFD  GN+++AN  F  A+GY L E+ GKHHRIFC      
Sbjct: 6   KSADNRNMLDAISRSQAVIEFDLKGNILTANRNFCMALGYDLAEIVGKHHRIFCDREIAA 65

Query: 72  SQQYQQFWTSLAQGKSHSGTFMRYKKDGSLLVLEATYFPIKTDGKVSSVMKIASDVTEQY 131
           S  YQ+FW SLA+G+  +  + R +KDGS + +EA+Y P+   GK   V+KIA+D+T + 
Sbjct: 66  SHAYQEFWESLARGEFQAKEYRRIRKDGSAVWIEASYNPVFRSGKPYKVVKIATDITAKR 125

Query: 132 LHAESQRDLLTALNQNFAVIEFEPDGTIISANSAFLKTMGYSLDQIKGKHHRLFCFDEFY 191
           + A      L AL+++ A IEF PDGTII+AN  F  T+ Y L +I+GKHHR+FC D  Y
Sbjct: 126 IKAVEDAGKLEALSRSQATIEFFPDGTIITANPNFCATVNYDLKEIEGKHHRMFC-DPAY 184

Query: 192 ---QQHPTFWKSLAAGQAYSGRFLRKNSYGSQVWIQASYSPVKDQNNKVYKIVKFASDIT 248
                +  FW+ LA+G+  S  F+R    G ++WIQA+Y+PV D+  KV K+VKFA+D+T
Sbjct: 185 TASAAYANFWQRLASGEFISDEFVRYGKNGKEIWIQAAYNPVLDEAGKVVKVVKFATDVT 244

Query: 249 AEVLREQQVTDA------------ANIAYSTSVE-----------------------TSQ 273
             +     + DA             + ++  S+E                        S 
Sbjct: 245 PRMSAITVLADALQALAAGDLVQRLDTSFVPSMEKLRADFNEVVGKLQATMQTISHNAST 304

Query: 274 VAQGGNHVLQDSVRLA---EKMVGNIEQSLQQIEQLVVLSKDVSE--------IVKT--- 319
           +A G   +   + +L+   E+   ++E++   +E++     D S+        +++T   
Sbjct: 305 IASGSGEIRIAADQLSQRTEQQAASLEETAAALEEITTTVTDASQRAAEAGKLVLRTREH 364

Query: 320 ---------------------------ISGIAD----QTNLLALNAAIEAARAGEQGRGF 348
                                      I G+ D    QTNLLALNA +EAARAGE G+GF
Sbjct: 365 AEHSGDVVQQAISAMDAISRSSGEITNIIGVIDDIAFQTNLLALNAGVEAARAGEAGKGF 424

Query: 349 AVVADEVRQLASRTSKATEEINQVVNKNLSLTEAVTSSISQVSQIANETNGRIVEVSTIM 408
           AVVA EVR+LA R++ A +EI  ++N +    E V + +  V +    T G + ++ + M
Sbjct: 425 AVVAQEVRELAQRSAVAAKEIKSLINTS---REQVANGVDLVGR----TGGALRDIQSQM 477

Query: 409 EQI 411
            +I
Sbjct: 478 GEI 480