Pairwise Alignments

Query, 412 a.a., long-chain fatty acid transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 446 a.a., long-chain fatty acid outer membrane transporter (RefSeq) from Escherichia coli BW25113

 Score =  295 bits (754), Expect = 2e-84
 Identities = 172/446 (38%), Positives = 251/446 (56%), Gaps = 46/446 (10%)

Query: 4   KSSLAVAISALIAGQVSAAGFQVAEHSASGLGRAFSGEAAVADNASVLARNPAAMMLFET 63
           KS+LAVA+ ALI+ Q  +AGFQ+ E S+SGLGRA+SGE A+AD+A  ++RNPA + +F+ 
Sbjct: 9   KSALAVAV-ALISTQAWSAGFQLNEFSSSGLGRAYSGEGAIADDAGNVSRNPALITMFDR 67

Query: 64  AQFSGALSIVDPEVNVDDLS-NNQSMK--DVAPLQIVPAAYYIRPINDQWAWGLAMFTTY 120
             FS     +DP+VN+   S + +S+K  ++AP   VP  +++ PINDQ+ WG ++ + Y
Sbjct: 68  PTFSAGAVYIDPDVNISGTSPSGRSLKADNIAPTAWVPNMHFVAPINDQFGWGASITSNY 127

Query: 121 GVATDYPNEIYAGDLAGDTSLISVNLNPNIAYRVNPELSLGFGLDLVAAKAKLTRHKGGL 180
           G+AT++ +    G + G T L ++NLN + AYR+N   S G G + V A+AK+ R  G L
Sbjct: 128 GLATEFNDTYAGGSVGGTTDLETMNLNLSGAYRLNNAWSFGLGFNAVYARAKIERFAGDL 187

Query: 181 APFMGG---------------------GNPSDNLIG-MTGETLALGWNIGALYELDEQNR 218
              + G                     G  S+  I  + G     GWN G LYELD+ NR
Sbjct: 188 GQLVAGQIMQSPAGQTQQGQALAATANGIDSNTKIAHLNGNQWGFGWNAGILYELDKNNR 247

Query: 219 IGFGYRSRVKLNFD-------DGEFSSYDSGIATS---AVVPGQLKIELPAIWELSGFHQ 268
               YRS VK++F        +  F++Y   I T+   A   G L + LP +WE+SG+++
Sbjct: 248 YALTYRSEVKIDFKGNYSSDLNRAFNNYGLPIPTATGGATQSGYLTLNLPEMWEVSGYNR 307

Query: 269 LNEQWAVHYSYQQTDWSSFEELTATSSQCKNGTCFQKIEQYQDNGRWSVGATYTLNTTWT 328
           ++ QWA+HYS   T WS F++L ATS+     T FQK E ++D  R ++G TY  +  WT
Sbjct: 308 VDPQWAIHYSLAYTSWSQFQQLKATST--SGDTLFQKHEGFKDAYRIALGTTYYYDDNWT 365

Query: 329 LRAGLAFDEQ---AGKATLSIPDSDRFWYSAGLTYTLTPQLTMDAGFALVQSRKGSFTEK 385
            R G+AFD+    A   ++SIPD DRFW SAG TY      ++D G + +  +     E 
Sbjct: 366 FRTGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTYAFNKDASVDVGVSYMHGQSVKINE- 424

Query: 386 NQIGQNLQFESEAVAYISALQFNYRF 411
                  QFESE  A++    FNY F
Sbjct: 425 ----GPYQFESEGKAWLFGTNFNYAF 446