Pairwise Alignments

Query, 419 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 399 a.a., outer membrane-specific lipoprotein transporter subunit (NCBI) from Escherichia coli BW25113

 Score = 56.2 bits (134), Expect = 2e-12
 Identities = 58/254 (22%), Positives = 112/254 (44%), Gaps = 37/254 (14%)

Query: 110 LVSNGQKSTIFVGLGVDDKEFDMKGPFLDLRAGQTLQDPKSPRFDPTQPQVMLGVDLARN 169
           ++ + +   + V LG+D  + D   P+L         + K    +P +  V+LG  LA  
Sbjct: 102 VLQSARSVAVGVMLGIDPAQKDPLTPYL--------VNVKQTDLEPGKYNVILGEQLASQ 153

Query: 170 LSVGVGDWVTLLATTAD-----GALNALD-FQVRGLYSTGVPELDKRQLYLHLASAQELL 223
           L V  GD + ++  +A      G + +   F V G ++    E+D  ++ +++  A  L+
Sbjct: 154 LGVNRGDQIRVMVPSASQFTPMGRIPSQRLFNVIGTFAAN-SEVDGYEMLVNIEDASRLM 212

Query: 224 NSSKVSTLSVYLFNTENTQTLQTWVENQLNQLSLSQEL--QVTPWQQLAFFYTRVKDLYD 281
                       +   N    + W++  L   SLSQ+   + + WQ    +  R  +L+ 
Sbjct: 213 R-----------YPAGNITGWRLWLDEPLKVDSLSQQKLPEGSKWQD---WRDRKGELFQ 258

Query: 282 RLF---GVMGTVMAMVVFVALFNTLT---MSVSERTREIGTLSALGAYPSDILAGFVREA 335
            +     +MG +++++V VA FN +T   + V E+  E+  L   G  P  I+  F+ + 
Sbjct: 259 AVRMEKNMMGLLLSLIVAVAAFNIITSLGLMVMEKQGEVAILQTQGLTPRQIMMVFMVQG 318

Query: 336 TLLALCGSLLGTLL 349
               + G++LG  L
Sbjct: 319 ASAGIIGAILGAAL 332