Pairwise Alignments

Query, 419 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 648 a.a., ABC transporter nucleotide binding/ATPase from Agrobacterium fabrum C58

 Score = 54.3 bits (129), Expect = 1e-11
 Identities = 74/351 (21%), Positives = 146/351 (41%), Gaps = 20/351 (5%)

Query: 5   ISQAWRLAALNLQRNRRRSLLSISIIAIAVLALTSAGGFGLYTYDSLRESTARDVGHLTL 64
           +++A R+A   +  ++ RSLL++  I I + ++ +    G  +   +  S +  +G  T+
Sbjct: 254 MTEALRMAGAAIWAHKMRSLLTMLGIIIGIASVAAISALGAGSQQQILSSIS-SLGTNTI 312

Query: 65  SQR-GYFAQEEETPLANGLEGSDHIRQVLLANPAIRGIQPRIELTGLVSNGQKSTIFVGL 123
             R G    + E      L  +D   + L+  P +  + P +  +  V     +      
Sbjct: 313 EVRAGKGFGDLEAGKIRTLVPAD--AEALVNQPYVDSVTPTVTTSVTVKRAAVAVNASVT 370

Query: 124 GVDDKEFDMKGPFLDLRAGQTLQDPKSPRFDPTQPQVMLGVDLARNLSVG----VGDWVT 179
           GV    F ++G  L+L  GQ         +      V++    AR+L       VG  + 
Sbjct: 371 GVGADFFRVRG--LELAHGQLFDAQDVIAYSQN---VVIDASAARDLFPDRVNPVGQVIL 425

Query: 180 LLATTADGALNALDFQVRGLYSTGVPELDKRQLYLHLASAQ-ELLNSSKVSTLSVYLFNT 238
           L      G + A    V    ++  P +D   +Y    +    +L    V  ++V + + 
Sbjct: 426 L------GTMPARVVGVTKRENSFGPAVDTLTVYAPYTTVMGRMLGRPNVDGITVRIRDD 479

Query: 239 ENTQTLQTWVENQLNQLSLSQELQVTPWQQLAFFYTRVKDLYDRLFGVMGTVMAMVVFVA 298
            +   ++  V   + +   +++  +T    +             L   +  +  +V  + 
Sbjct: 480 VDPGNVEAAVTRLIERRHGAKDFFLTNSATIRETIETTTQTLTLLISSVAVISLIVGGIG 539

Query: 299 LFNTLTMSVSERTREIGTLSALGAYPSDILAGFVREATLLALCGSLLGTLL 349
           + N + +SV+ERT+EIG   A+GA  SDIL+ F+ EA ++ L G L+G +L
Sbjct: 540 VMNIMLVSVTERTKEIGVRVAVGARRSDILSQFLIEAVMVCLVGGLMGIML 590