Pairwise Alignments

Query, 261 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 239 a.a., orf, hypothetical protein (VIMSS) from Escherichia coli BW25113

 Score =  101 bits (251), Expect = 2e-26
 Identities = 70/245 (28%), Positives = 125/245 (51%), Gaps = 23/245 (9%)

Query: 9   VLADDEPLLRHHLNKLLAELWPALEIVASAENGQIALQAIEQHQPDVVFLDIRMPKMDGI 68
           ++ DDEPL R +L   L E    +EIV    N    + A+ + +PDV+FLDI+MP++ G+
Sbjct: 5   LIVDDEPLARENLRVFLQEQ-SDIEIVGECSNAVEGIGAVHKLRPDVLFLDIQMPRISGL 63

Query: 69  EVARRLLQQPKVPLVVFITAYDEYAVSAFETHAIDYLLKPLSSSRLASCCEKLQQQLRRN 128
           E+   L  + + P +VF+TA+DEYA+ AFE HA DYLLKP+  +RL     +L+Q+    
Sbjct: 64  EMVGMLDPEHR-PYIVFLTAFDEYAIKAFEEHAFDYLLKPIDEARLEKTLARLRQE---- 118

Query: 129 VAPSNDLAQLMSQFEQLTRTVKPQYQVWLKASKGEEIHLIAVNELLYVKAEDKYLSLYKV 188
              S     L+ + +Q  +        ++  +    I+L+ + ++ +V +    + +   
Sbjct: 119 --RSKQDVSLLPENQQALK--------FIPCTGHSRIYLLQMKDVAFVSSRMSGVYVTSH 168

Query: 189 HGATTHEYLLRSSLKELLAQLDPNQFWQIHRSIVVNVGKIDKVTRDFGGKMWVHI-DRLQ 247
            G      L   +L+     L      + HR  +VN+  + ++  +  G+  + + + L 
Sbjct: 169 EGKEGFTELTLRTLESRTPLL------RCHRQYLVNLAHLQEIRLEDNGQAELILRNGLT 222

Query: 248 LPVSR 252
           +PVSR
Sbjct: 223 VPVSR 227