Pairwise Alignments

Query, 261 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 245 a.a., two-component system response regulator YpdB from Escherichia coli ECOR38

 Score =  118 bits (296), Expect = 1e-31
 Identities = 72/247 (29%), Positives = 130/247 (52%), Gaps = 18/247 (7%)

Query: 9   VLADDEPLLRHHLNKLLAELWPALEIVASAENGQIALQAIEQHQPDVVFLDIRMPKMDGI 68
           ++ +DE L +  L+ L+ E    +EIV + ++G   L+ ++ ++ D +FLDI +P +DG+
Sbjct: 4   IIVEDEFLAQQELSWLIKE-HSQMEIVGTFDDGLDVLKFLQHNRVDAIFLDINIPSLDGV 62

Query: 69  EVARRLLQQPKVPLVVFITAYDEYAVSAFETHAIDYLLKPLSSSRLASCCEKLQQQLRRN 128
            +A+ + Q    P +VFITA+ E+AV AFE  A DY+LKP   SR+    +KL+   ++ 
Sbjct: 63  LLAQNISQFAHKPFIVFITAWKEHAVEAFELEAFDYILKPYQESRITGMLQKLEAAWQQQ 122

Query: 129 VAPSNDLAQLMSQFEQLTRTVKPQYQVWLKASKGEEIHLIAVNELLYVKAEDKYLSLYKV 188
              S   A  +++       V           K E I +  +N++ Y +A +K   +Y  
Sbjct: 123 QTSSTTPAATVTRENDTINLV-----------KDERIIVTPINDIYYAEAHEKMTFVY-- 169

Query: 189 HGATTHEYLLRSSLKELLAQLDPNQFWQIHRSIVVNVGKIDKVTRDFGGKMWVHIDRL-- 246
                  Y++  ++ E  ++L P+ F++ HRS  VN+ KI ++   F     + +  L  
Sbjct: 170 --TRRESYVMPMNITEFCSKLPPSHFFRCHRSFCVNLNKIREIEPWFNNTYILRLKDLDF 227

Query: 247 QLPVSRA 253
           ++PVSR+
Sbjct: 228 EVPVSRS 234