Pairwise Alignments

Query, 3263 a.a., type I secretion C-terminal target domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 405 a.a., hypothetical protein from Sphingobium sp. HT1-2

 Score = 54.7 bits (130), Expect = 4e-11
 Identities = 29/61 (47%), Positives = 38/61 (62%), Gaps = 3/61 (4%)

Query: 3113 GNSGMTLLSG-SGDDFVQGGAGDDVLVGGLGADILVGGTGADMFKWTLDGVDDKVDHIRD 3171
            G  G  ++ G +GDD V GGAG+D + GGLGAD L+GG G D F W    + +  D +RD
Sbjct: 264  GGEGRDIVDGGAGDDAVAGGAGNDRIYGGLGADRLLGGAGKDRFVWR--DLAEGGDTVRD 321

Query: 3172 F 3172
            F
Sbjct: 322  F 322



 Score = 51.6 bits (122), Expect = 3e-10
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 3110 LVAGNSGMTLLSGSGDDFVQGGAGDDVLVGGLGADILVGGTGADMFKWTLDGVDDKVDHI 3169
            L  G+   TL  G+GDD + G AGDD+L GG  ADI+ G  GAD+  W   G D      
Sbjct: 199  LYGGDDRDTLSGGNGDDRIHGDAGDDILYGGSDADIMFGDDGADIL-WGEWGDDRLYGGS 257

Query: 3170 RDFNVNEGDSIDLID 3184
             +  ++ G+  D++D
Sbjct: 258  GNDQLDGGEGRDIVD 272



 Score = 39.3 bits (90), Expect = 2e-06
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 3/63 (4%)

Query: 3092 IAADGSLLDHRSATDDSLLVAGNSGMTLLSG-SGDDFVQGGAGDDVLVGGLGADILVGGT 3150
            + ADG+  D     DD   ++G +G   + G +GDD + GG+  D++ G  GADIL G  
Sbjct: 191  VGADGA--DRLYGGDDRDTLSGGNGDDRIHGDAGDDILYGGSDADIMFGDDGADILWGEW 248

Query: 3151 GAD 3153
            G D
Sbjct: 249  GDD 251



 Score = 36.6 bits (83), Expect = 1e-05
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 7/60 (11%)

Query: 3122 GSGDDFVQGGAGDDVLVGGLGADILVGGTGADMFKWTLDGVDDKVDHIRDFNVNEGDSID 3181
            G+GDD+V  G  ++++  G G D L+GG   D F+   DG DD +     F    GDS+D
Sbjct: 121  GTGDDYVLLGPREEIIRAGDGRDRLIGGDMHDDFRG--DGGDDVL-----FGRGGGDSLD 173