Pairwise Alignments
Query, 3263 a.a., type I secretion C-terminal target domain-containing protein from Vibrio cholerae E7946 ATCC 55056
Subject, 1018 a.a., hypothetical protein from Magnetospirillum magneticum AMB-1
Score = 60.8 bits (146), Expect = 1e-12
Identities = 155/653 (23%), Positives = 244/653 (37%), Gaps = 116/653 (17%)
Query: 2553 IGDDVDIAPITNVVGNEGQAIDISLGAQIL--DKAPSLPGGVTYTENSPETLRVEISGVP 2610
+G V A ++ G G + +S A D G T T + T+ + V
Sbjct: 71 VGTQVTTAGTDHLDGGAGASAYLSSVANFTAGDTISDSGGLDTLTVSDAGTINLAAGTVT 130
Query: 2611 DGAFLSLADGTLGTSLGGGVWVFEINAQQLDKVVFNSGDN--------NQLNWNGNLHFK 2662
L+LA G LGGGV N QQ +V +G + + G +
Sbjct: 131 GIEILTLAAGGNTVILGGGV-----NPQQFTTIVGGAGTDVIKQADGGGTFDLTGIVLTS 185
Query: 2663 VQSVDTGLAGDQHLGSAQEFDVHVDVTAVNDRPELINVQDQVTEEDTPLLLNSFTLADID 2722
V+S+ TG S+ FD V VN V D V+ + + T ++
Sbjct: 186 VESIATGTGT-----SSITFD-EVSAAGVN------TVVDAVSGDGDSVTFYQTTAGTLN 233
Query: 2723 AQLDDPNADYTLQIGVNSGVLIIDSSLSSGLTIQGDGTGALSITGNVAEINAAIGAGLVK 2782
+ + VN +I+D S +SG + G +I G + GAG
Sbjct: 234 I---------SAKTFVNIEGIILDGSTASGDVVLVGGAQGATIIGGSGNDTLSGGAGADS 284
Query: 2783 FVPSPDFYGQVAVTLNVND---NGNAGSE-IAGDASTAHDNSAQFV----IDVTAVNDKP 2834
F+ G + N D NG G++ + A+T DN+ I+V + +
Sbjct: 285 FIGGS---GNDVIYANQGDPLINGGIGTDTLVITATTFDDNNFDDTHLQGIEVINITNA- 340
Query: 2835 EVDGIHLTAQIDEASGQKLTGITVSDVDYAGSHTNDVMK-----VTLSISEGILSVQAPA 2889
V G + +++ G + + + V G NDV+ L +G ++ A
Sbjct: 341 SVAGQYFKVD-NQSEGFTINVTSSAHVTVLGGTGNDVINGGSAGEYLWGYQGNDTITGNA 399
Query: 2890 GSSVAVSYALDGSVILEGSPEAINALLNHSDSAYGLFVDATAIAGTQINL---TVTAQDM 2946
G+ V A + G+ A + LL S + D + GT T+T D
Sbjct: 400 GNDTIVGDAGADVAVFTGN--AADYLLTTSSGTLTV-TDRSGTDGTDTLTGIETLTFAD- 455
Query: 2947 GVYFENASGMALEESKTYPIQVNPVANAPSLSMNPAFGYAQQIYANQSLSAQGIALLGAI 3006
G + +ASG L A S ++ G+A+ I + G
Sbjct: 456 GSFAVSASGTTL------------TALGASSTLTVGSGFAEVIMGS-----------GTN 492
Query: 3007 AALTDLHETLSLRVDHLPAGASLSSTAGSVTDLGNGRWEVSPDALESLKVVGLDEGVHTL 3066
+TD+ TLS + L GA L + S T S +++ + G++
Sbjct: 493 KLVTDM-ATLSAGLSIL-GGAGLDTVVISDT--------ASMGSVQMPALTGIETLTLAS 542
Query: 3067 SLTALSTESDGSSAPSA--NSIDYRIEIAADGSLLDHRSATDDSLLVAGNSGMTLLSGSG 3124
S+TA + G A SA N +D AA G++ H + D L TL GSG
Sbjct: 543 SITAAQSVYLGGQAESAGLNVVDAS---AATGAVEIHGAFRSDDL--------TLTGGSG 591
Query: 3125 DDFVQGGAGDDVLVGGLGADILVGGTGADMFKW---------TLDGVDDKVDH 3168
+D + G AG+D LVGG G++ + G G D + TL+G V H
Sbjct: 592 NDTIHGAAGNDTLVGGGGSNTIDAGAGTDTVSYGSMGSGITATLNGSSAVVTH 644
Score = 60.1 bits (144), Expect = 3e-12
Identities = 55/209 (26%), Positives = 90/209 (43%), Gaps = 35/209 (16%)
Query: 3040 GNGRWEVSPDALESLKVVGLDEGVHTLSLTALST----------ESDGSSAPSANSIDYR 3089
G G ++++ L S++ + G +++ +S DG S +
Sbjct: 172 GGGTFDLTGIVLTSVESIATGTGTSSITFDEVSAAGVNTVVDAVSGDGDSVTFYQTTAGT 231
Query: 3090 IEIAA------DGSLLDHRSATDDSLLVAGNSGMTLLSGSGDDFVQGGAGDDVLVGGLGA 3143
+ I+A +G +LD +A+ D +LV G G T++ GSG+D + GGAG D +GG G
Sbjct: 232 LNISAKTFVNIEGIILDGSTASGDVVLVGGAQGATIIGGSGNDTLSGGAGADSFIGGSGN 291
Query: 3144 DILVGGTGADMFKWTLDGVDDKVDHIRDFNVNEGDSIDL--IDVVQDLGNHLTMEQLLNN 3201
D++ G + + G D V F+ N D L I+V+ + N
Sbjct: 292 DVIYANQGDPLINGGI-GTDTLVITATTFDDNNFDDTHLQGIEVIN-----------ITN 339
Query: 3202 LSVSNQLTAQVVDND---VTLQVTTDNQV 3227
SV+ Q VDN T+ VT+ V
Sbjct: 340 ASVAGQYFK--VDNQSEGFTINVTSSAHV 366
Score = 52.8 bits (125), Expect = 4e-10
Identities = 142/651 (21%), Positives = 232/651 (35%), Gaps = 93/651 (14%)
Query: 2587 SLPGGVTYTENSPETLRVEISGVPDGAFLSLADGTLGTSLGGG-----VWVFEINAQQLD 2641
S+ G +N E + ++ A +++ GT + GG +W ++ N D
Sbjct: 341 SVAGQYFKVDNQSEGFTINVTS---SAHVTVLGGTGNDVINGGSAGEYLWGYQGN----D 393
Query: 2642 KVVFNSGDNNQLNWNGNLHFKVQSVDTGLAGDQHLGSAQEFDVHVDVTAVNDRPELINVQ 2701
+ N+G++ + G +V TG A D L ++ V DR
Sbjct: 394 TITGNAGNDTIVGDAG----ADVAVFTGNAADYLLTTSS------GTLTVTDRSGTDGTD 443
Query: 2702 DQVTEEDTPLLLNSFTLADIDAQLDDPNADYTLQIGVNSGVLIIDSSLSSGLTIQGDGTG 2761
E SF ++ L A TL +G +I+ S + +T +
Sbjct: 444 TLTGIETLTFADGSFAVSASGTTLTALGASSTLTVGSGFAEVIMGSGTNKLVTDMATLSA 503
Query: 2762 ALSITGNVAEINAAIG-AGLVKFVPSPDFYGQVAVTLNVNDNGNAGSEIAGDASTAHDNS 2820
LSI G I + V P G +TL + + G A +A N
Sbjct: 504 GLSILGGAGLDTVVISDTASMGSVQMPALTGIETLTLASSITAAQSVYLGGQAESAGLN- 562
Query: 2821 AQFVIDVTAVNDKPEVDGIHLTAQIDEASGQKLTGITVSDVDYAGSHTNDVMKVTLSISE 2880
V+D +A E+ G + + LTG + +D + G+ ND TL
Sbjct: 563 ---VVDASAATGAVEIHGAFRSDDLT------LTGGSGNDTIH-GAAGND----TLVGGG 608
Query: 2881 GILSVQAPAGSSVAVSYALDGSVILEGSPEAINALLNHSDSAYGLFVDATAIAGTQIN-- 2938
G ++ A AG+ VSY GS I A LN S + + T+I
Sbjct: 609 GSNTIDAGAGTDT-VSYGSMGS--------GITATLNGSSAVVTHSASTDTVTNTEILRG 659
Query: 2939 ------LTVTAQDMGVYFENASGMALEESKTYPIQVNPVANAPSLSMNPAFGYAQQIYAN 2992
V + +GV + +G+ + + S S+ A G
Sbjct: 660 SGHDDVFFVASASVGVTVDGGAGVDTMDYSAMGAGITATVTGTSASVVHAGGTDAITNVE 719
Query: 2993 QSL-SAQGIALLGAIAALTDLHETLSLRVDHLPAGASLSSTAGSVTDLGNGRWEVSPDAL 3051
+ SA +G T + DHL G + TD+ + S +
Sbjct: 720 AWVGSAHDDTFIGDSGGDTFFG---GIGADHLTGGGGADTFV--YTDVNQSQDSASVRDV 774
Query: 3052 ESLKVVGLDEGVHTLSLTALST---ESDGSSAPSANSIDYRIE----IAADG-------S 3097
+ G D +LS T + E GS +S+ + + DG +
Sbjct: 775 ITDFTTGTDHIDISLSGTHVDVSGFEVVGSYNAGQSSLTGGVARTGGVEGDGFYSTFDQA 834
Query: 3098 LLDHRSATDDSL-------------LVAGNSGMTLLSGSGDDFVQGGAGDDVLVGGLGAD 3144
L ++ +TD + + A + + +G+D + GG G+D+L GG G +
Sbjct: 835 LYIYQGSTDSGIGTDGGYVIGSAGTITAADLNFNITGTAGNDTLVGGLGNDILAGGTGTN 894
Query: 3145 ILVGGTGADMFKWTLDGVDDKVDHIRDFNVNEGDSIDLIDVVQDLGNHLTM 3195
L GG G+D F LD V I DFN + D+I L + LG+ T+
Sbjct: 895 TLTGGGGSDSF--VLDSTGTAV--ITDFN-SAADNITLSNGSFGLGSSGTL 940
Score = 43.9 bits (102), Expect = 2e-07
Identities = 124/535 (23%), Positives = 197/535 (36%), Gaps = 77/535 (14%)
Query: 116 DGVDPTTALEA--------AAAGAGAGGSANGGA--ITIDYNFLEVLASTAFDTQGYNQT 165
DG D T +E A + +G +A G + +T+ F EV+ + G N+
Sbjct: 440 DGTDTLTGIETLTFADGSFAVSASGTTLTALGASSTLTVGSGFAEVIMGS-----GTNKL 494
Query: 166 FSTTQTLVNPLRFAAGGESLSTQVTEGSLSLGTY--PQTSTVTSLITAGSLALLPASFVP 223
+ TL L GG L T V + S+G+ P + + +L A S+ + ++
Sbjct: 495 VTDMATLSAGLSIL-GGAGLDTVVISDTASMGSVQMPALTGIETLTLASSITAAQSVYLG 553
Query: 224 EAAFLTSLLAELNQDITSSGQPVV-----FRYDAATNSIIGEQNGSTVLSIAISAESIGR 278
A A LN S+ V FR D T + G T+ A + +G
Sbjct: 554 GQAES----AGLNVVDASAATGAVEIHGAFRSDDLT--LTGGSGNDTIHGAAGNDTLVGG 607
Query: 279 DVNLTITTTLSQPIDHLPSVGGGLVSISGDQISIALQLTGTDS--NGNVIQAP-IDVVVA 335
+ TI S+G G+ + ++ TD+ N +++ D V
Sbjct: 608 GGSNTIDAGAGTDTVSYGSMGSGITATLNGSSAVVTHSASTDTVTNTEILRGSGHDDVFF 667
Query: 336 INDGSAPVMVDEPTLSLNENDLPAGSDGADPLTVSGQFDTQL---GSDQVASYQIDPSTA 392
+ S V VD ++ D A G TV+G + + G+D + + + +A
Sbjct: 668 VASASVGVTVDGGA-GVDTMDYSAMGAGITA-TVTGTSASVVHAGGTDAITNVEAWVGSA 725
Query: 393 NPIAGLTSQGDAVILGEPTLIDGNRVYQATAGG-RDIFQLT-LNADGSYQFVLQGTLDHA 450
+ T GD+ G T G T GG D F T +N V D
Sbjct: 726 HDD---TFIGDS---GGDTFFGGIGADHLTGGGGADTFVYTDVNQSQDSASVRDVITDFT 779
Query: 451 AGSDALTISLPIVAIDYDNDSSAPGNLNIEIQDDKPIIIGAEQLTVAEQTLDTGSIGGGA 510
G+D + ISL +D ++G+ A Q+ TG +
Sbjct: 780 TGTDHIDISLSGTHVDVSGFE----------------VVGSYN---AGQSSLTGGVARTG 820
Query: 511 SLVADGNFTTTQGSDGVVSYRLDSLTDSVAGITSGGVAVTLSESVDANGNYTYTATAGGE 570
+ DG ++T + Y TDS G G V + A+ N+ T TAG +
Sbjct: 821 GVEGDGFYSTFDQA----LYIYQGSTDSGIGTDGGYVIGSAGTITAADLNFNITGTAGND 876
Query: 571 PVFTLLLNQ---DGSYRFTLQGSLDHALNSDELLVNF--TVVATDFDGDTASITL 620
+ L N G+ TL G SD +++ T V TDF+ +ITL
Sbjct: 877 TLVGGLGNDILAGGTGTNTLTG----GGGSDSFVLDSTGTAVITDFNSAADNITL 927
Score = 36.6 bits (83), Expect = 3e-05
Identities = 82/313 (26%), Positives = 120/313 (38%), Gaps = 60/313 (19%)
Query: 524 SDG-VVSYRLDSLTDSVAGITSGGVAVTLSESVDANGNYTYTATAGGEPVFTLLLNQDGS 582
SDG +S +L+S G + G AV V+A+G+ T+TATAG T+
Sbjct: 8 SDGDALSIKLNS------GHSDHGTAV-----VNADGSITFTATAGYSGAATITYTITDG 56
Query: 583 YRFTLQGSLDHALNSDELLVNFTVVATD-FDG---------DTASITLPVTVKDDKPYFT 632
+ ++QG+ A ++ + T TD DG A+ T T+ D T
Sbjct: 57 HGGSVQGT---AFSAVTVGTQVTTAGTDHLDGGAGASAYLSSVANFTAGDTISDSGGLDT 113
Query: 633 NVTSLNVHENDLPQGSDVTKEPLTASGQFELVQGSDRVASFTLDSSVNPVQGLTSNGVAV 692
+T + +L G+ E LT L G + V L VNP Q T G A
Sbjct: 114 -LTVSDAGTINLAAGTVTGIEILT------LAAGGNTV---ILGGGVNPQQFTTIVGGAG 163
Query: 693 TLSAPVDDGHG--NLTYTAMAGAVTVFTLTLNTDGTYSFTLAAPVDHALNSNDLTLNFQV 750
T DG G +LT + ++ T T + T+ AA V N V
Sbjct: 164 TDVIKQADGGGTFDLTGIVLTSVESIATGTGTSSITFDEVSAAGV-----------NTVV 212
Query: 751 IATDFDGDSDSIVLPV--KINDDKPYFTNVQGLYVHENDLPQGSDTDKEPVTVNGQFQLV 808
A DGDS + +N F N++G+ + GS + V V G
Sbjct: 213 DAVSGDGDSVTFYQTTAGTLNISAKTFVNIEGIIL------DGSTASGDVVLVGG----A 262
Query: 809 QGADTVASFALDS 821
QGA + D+
Sbjct: 263 QGATIIGGSGNDT 275
Score = 35.8 bits (81), Expect = 5e-05
Identities = 100/460 (21%), Positives = 171/460 (37%), Gaps = 78/460 (16%)
Query: 2368 SGNDINTVGMTVTGKVTDSTVFDETNAS-----LQGVSSSDADKTF----------TSQV 2412
+G + +V TG T S FDE +A+ + VS TF +++
Sbjct: 179 TGIVLTSVESIATGTGTSSITFDEVSAAGVNTVVDAVSGDGDSVTFYQTTAGTLNISAKT 238
Query: 2413 SFEVKPVVDDITIGSGSPISVTGDEDSWIALADQGNAFNVSLNDNDGSEQFVS------- 2465
++ ++ D + SG + V G + + I G + N +L+ G++ F+
Sbjct: 239 FVNIEGIILDGSTASGDVVLVGGAQGATII----GGSGNDTLSGGAGADSFIGGSGNDVI 294
Query: 2466 -------LVLTGLPTDFLVKSLSSDYVVKNNGGGEWSVQIRNPNLTSLDLSALAIKPTKD 2518
L+ G+ TD LV +++ NN I N+T+ ++ K
Sbjct: 295 YANQGDPLINGGIGTDTLV--ITATTFDDNNFDDTHLQGIEVINITNASVAGQYFKVDNQ 352
Query: 2519 FSGEVQLGIKVFTQESLLGEPVEHTGQFTLNVTPIGDDV----------DIAPITNVVGN 2568
G + + ++LG TG +N G+ + A +VG+
Sbjct: 353 SEG-FTINVTSSAHVTVLG----GTGNDVINGGSAGEYLWGYQGNDTITGNAGNDTIVGD 407
Query: 2569 EGQAIDISLGAQILDKAPSLPGGVTYTENS----PETLR-VEISGVPDGAFLSLADGTLG 2623
G + + G + G +T T+ S +TL +E DG+F A GT
Sbjct: 408 AGADVAVFTGNAADYLLTTSSGTLTVTDRSGTDGTDTLTGIETLTFADGSFAVSASGTTL 467
Query: 2624 TSLGGGVWVFEINAQQLDKVVFNSGDNNQLNWNGNLHFKVQSVDTGLAGDQHLGSAQEFD 2683
T+LG + +V+ SG N V + T AG LG A
Sbjct: 468 TALGASSTL--TVGSGFAEVIMGSGTNK----------LVTDMATLSAGLSILGGA---- 511
Query: 2684 VHVDVTAVNDRPELINVQ-DQVTEEDTPLLLNSFTLAD---IDAQLDDPNADYTLQIGVN 2739
+D ++D + +VQ +T +T L +S T A + Q + +
Sbjct: 512 -GLDTVVISDTASMGSVQMPALTGIETLTLASSITAAQSVYLGGQAESAGLNVVDASAAT 570
Query: 2740 SGVLIIDSSLSSGLTIQGDGTGALSITGNVAEINAAIGAG 2779
V I + S LT+ G G+G +I G A + +G G
Sbjct: 571 GAVEIHGAFRSDDLTLTG-GSGNDTIHG-AAGNDTLVGGG 608
Score = 34.3 bits (77), Expect = 1e-04
Identities = 141/652 (21%), Positives = 220/652 (33%), Gaps = 93/652 (14%)
Query: 1718 DSDGTSVDLVFAGYDSNHKPIYQANLTVAQVVTGIQVQPVASSTANIDIKATVIVTENDG 1777
DSDG ++ + S+H V ++TA AT+ T DG
Sbjct: 7 DSDGDALSIKLNSGHSDH----------GTAVVNADGSITFTATAGYSGAATITYTITDG 56
Query: 1778 HVRQVEETIRILVEPKIDVTENYHNAVSGNEDDRIHVTWVPQNTPGNIQNPDAQEYFSRV 1837
H V+ T V VT + + G +++ V T G+ + V
Sbjct: 57 HGGSVQGTAFSAVTVGTQVTTAGTDHLDGGAGASAYLSSVANFTAGDTISDSGGLDTLTV 116
Query: 1838 EISGFPDGSRVFVNNVEV-TLINGVLVLEPAAGQSDLDFSNQVSAAGYIQVIPPHNSSTD 1896
+G + + V +E+ TL G + G + F+ V AG VI +
Sbjct: 117 SDAGTINLAAGTVTGIEILTLAAGGNTVILGGGVNPQQFTTIVGGAG-TDVIKQADGGGT 175
Query: 1897 FTLSTAITVKEQDHEYVDAGNPGQGIA-EEVIHGSIGVKVNPIAEPDGQLLVENAGSVTQ 1955
F L+ + E + G I +EV + V+ ++ + + T
Sbjct: 176 FDLTGIVLTSV---ESIATGTGTSSITFDEVSAAGVNTVVDAVSGDGDSVTFYQTTAGTL 232
Query: 1956 TVQADANGKIDFTINNVS---------GGQAGANVIRFDNLDSNTAGSYQSDELVDQLVV 2006
+ A I+ I + S GG GA +I D+ + G+ D +
Sbjct: 233 NISAKTFVNIEGIILDGSTASGDVVLVGGAQGATIIGGSGNDTLSGGAG-----ADSFIG 287
Query: 2007 SFGNVPQEVLNQLLITGAINNGDGTWTITNEADFSIKAPNGLVYSSNN--DPDKNGFNDI 2064
GN +V+ IN G GT T+ A + NN D G I
Sbjct: 288 GSGN---DVIYANQGDPLINGGIGTDTLVITA---------TTFDDNNFDDTHLQGIEVI 335
Query: 2065 KIT--ITAKVYDQGEDSSE---VKITKQVSTELTLSFPTEVTGNNSVAAQLNWVGDADDL 2119
IT A Y + ++ SE + +T + +V N A + W +D
Sbjct: 336 NITNASVAGQYFKVDNQSEGFTINVTSSAHVTVLGGTGNDVI-NGGSAGEYLWGYQGNDT 394
Query: 2120 VIGKEDNTVNLGQQIQDKLMVNATGFDAVADELSIVINASDLPAGASIGGQDFNFVDGHY 2179
+ G N +G DA AD NA+D S G
Sbjct: 395 ITGNAGNDTIVG--------------DAGADVAVFTGNAADYLLTTSSGTL--------- 431
Query: 2180 VFKGTLNPDGSISGLEGLVLIPPRDFA-GDFKLPITFVTTDTQSGDEKTLTAQVPVAISP 2238
T+ G + L I FA G F + + TT T G TLT S
Sbjct: 432 ----TVTDRSGTDGTDTLTGIETLTFADGSFAVSAS-GTTLTALGASSTLTVG-----SG 481
Query: 2239 VADVPSSSGDQPL-DNHVTPSITLNVQETLGLDANHQPTDLANDTPTQDGIAYE--DGIV 2295
A+V SG L + T S L++ GLD T + +DT + + GI
Sbjct: 482 FAEVIMGSGTNKLVTDMATLSAGLSILGGAGLD-----TVVISDTASMGSVQMPALTGIE 536
Query: 2296 HLNLAIGLADSLNGSTQGQEVLTEVTLTLNDTNSGVFVDANGQSLGTSITLT 2347
L LA + + + GQ + + +G V+ +G +TLT
Sbjct: 537 TLTLASSITAAQSVYLGGQAESAGLNVVDASAATGA-VEIHGAFRSDDLTLT 587