Pairwise Alignments

Query, 678 a.a., exoribonuclease 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 832 a.a., Ribonuclease R from Xanthobacter sp. DMC5

 Score =  177 bits (449), Expect = 2e-48
 Identities = 153/530 (28%), Positives = 248/530 (46%), Gaps = 26/530 (4%)

Query: 121 EADFQEGDWVVAHLVRHPLKGDDGFFVQISHKITDANDKIAPWWVTLAENDLPNSEPAGI 180
           E + ++GD V   L+R  + G      ++  K+     + A   + +  + +PN+ P  +
Sbjct: 241 EHEAEDGDLVTVELMRQRVFGLPT--ARVKEKLGSLKSEKAVSLIAIHAHGIPNAFPDVV 298

Query: 181 --DDWQLKDDADLVREDLTALPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIADPTAY 238
             +    K      RED   LP VTID    KD DDA++A    +G F +T+AIAD +AY
Sbjct: 299 LKEAEAAKQITVRGREDWRDLPLVTIDPPDAKDHDDAVHAAADEDGGFIVTVAIADVSAY 358

Query: 239 ITPEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRKDGVI 298
           + P   +D+ A  RG ++Y P R +PMLP  ++++LCSL  ++ RPAL   + I  DG  
Sbjct: 359 VRPGTALDREALIRGNSVYFPDRVVPMLPERISNDLCSLRPDEDRPALAVRLVIGGDGRK 418

Query: 299 GDDIRFFAANIKSHARLVYDHVSDWLETGSSEQWQPSEEIAQVVRDLYAFSQARANWRET 358
                F    ++S  +L Y    + +E  + +   P  E   V++ LYA        R+ 
Sbjct: 419 RSH-SFHRILMRSAGKLAYAQAQNAIEGRTDDITDPLVE--GVLKPLYAAYACVKKARDA 475

Query: 359 HAVVFPDRPDYRFELSADNDVVAIHADMRRTANRLVEESMITANICAGKTLQTTFGFGVF 418
              +  D P+ +  L  D  V  +    R  A+RL+EE MI AN+ A +TL+      ++
Sbjct: 476 RQPLDLDLPERKIILKPDGTVDRVVVPERLDAHRLIEEFMILANVAAAETLEEKKTPLIY 535

Query: 419 NTHAG---FKAEKMADVVELMAVNGAPNADAETLATVEGFAALRRWLATQETSYLDNRIR 475
             H G    K   + D ++ + + G P  D    +       L     T     ++  I 
Sbjct: 536 RVHDGPTLAKLSALRDFLKTLDI-GLPKTDQVRPSHFN--RILEEVKDTDAAPLVNQVIL 592

Query: 476 KYQSYSEIGNQPLPHFAMGLDVYATWTSPIRKYGDMINHR-LLKAHILGK--APVQTPDE 532
           + QS +E  ++   HF + L  YA +TSPIR+Y D+I HR L++A  +GK   P     E
Sbjct: 593 RSQSQAEYASENYGHFGLNLRRYAHFTSPIRRYADLIVHRGLVRALGVGKDGLPDDATVE 652

Query: 533 TVGE---ELALHRKHHKIAERNVADWLYARTLADEPAKETRFQAEIFDINRPGMRVRLLE 589
           ++GE    +++  +    AER   D L A  LAD+      F   I    + G+ V L  
Sbjct: 653 SLGEVAAAISVTERRAMAAERETVDRLIAHHLADQIG--ATFNGRITGATKAGLFVALDI 710

Query: 590 NGAMAFIPGALILDNKERIECNGEDGTVLIDKEV--VYKLGDVLEIVLTE 637
            GA  FIP + +  +  R +   E    L+      ++++GD +E+ L E
Sbjct: 711 TGADGFIPASTLGQDYYRYD---EVRQALVGDRTGEMHRIGDRVEVKLVE 757