Pairwise Alignments

Query, 678 a.a., exoribonuclease 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 875 a.a., exoribonuclease R from Pseudomonas simiae WCS417

 Score =  176 bits (445), Expect = 5e-48
 Identities = 157/582 (26%), Positives = 260/582 (44%), Gaps = 50/582 (8%)

Query: 24  GTIKASDKGFGFL-EVDSKTSYFVPPPYMKKCMHGDKVVAFIRTENEREVAEPS--ELIE 80
           G I     GFGFL   D     F+ P  M+    GD+ +A +   + R   E    E++ 
Sbjct: 91  GRIAGHRDGFGFLIPDDGSDDLFMSPAQMRLVFDGDRALARVSGLDRRGRREGVIVEVVS 150

Query: 81  QSLTRFIGRVKLFKGKLNVAPDHPQLKKLSLKAKTKKGLNEADFQEGDWVVAHLVRHPLK 140
           ++    +GR     G   V PD+P++++  L    + G  +     G +V   +   P  
Sbjct: 151 RAHESIVGRYFEEGGIGFVVPDNPKVQQEVLITPGRNGAAKV----GQFVEVKITHWPTA 206

Query: 141 G--DDGFFVQISHKITDANDKIAPWWVTLAENDLPNSEPAGI--DDWQLKDDADLV---- 192
                G  V++         +I    V L   D+P+  P  +  +  +LK + +      
Sbjct: 207 RFQPQGDIVEVVGNYMAPGMEID---VALRTYDIPHVWPEAVLKEAGKLKPEVEEKDKEK 263

Query: 193 REDLTALPFVTIDGESTKDMDDALYAQQLP------NGDFALTIAIADPTAYITPEDEMD 246
           R DL  LPFVTIDGE  +D DDA+Y +  P      +G + L +AIAD ++Y+     +D
Sbjct: 264 RIDLRHLPFVTIDGEDARDFDDAVYCEAKPGKLRLFSGGWKLFVAIADVSSYVKIGSALD 323

Query: 247 KVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRKDGVIGDDIRFFA 306
             A+ RG ++Y P R IPMLP  L++ LCSL     R A+ C +TI K G +  D +F+ 
Sbjct: 324 NEAQVRGNSVYFPERVIPMLPEQLSNGLCSLNPKVDRLAMVCEMTISKTGEM-TDYQFYE 382

Query: 307 ANIKSHARLVYDHVSDWLET-GSSEQWQPSEEIAQVV---RDLYAFSQARANWRETHAVV 362
           A I S ARL Y+ VS  LET  +SE      E A VV   + LY+  +     R T   +
Sbjct: 383 AVIHSQARLTYNKVSTILETPKTSEAKALRSEYAGVVPHLKQLYSLYKVLLGARHTRGAI 442

Query: 363 FPDRPDYRFELSADNDVVAIHADMRRTANRLVEESMITANICAGKTLQTTFGFGVFNTHA 422
             +  + R    ++  + AI    R  A++L+EE M+ AN+   + L+      ++  H 
Sbjct: 443 DFETQETRIVFGSERKIAAITPTTRNDAHKLIEECMLAANVATAEFLKKHEIPALYRVHD 502

Query: 423 GFKAEKMADVVELMAVNGAPNADAETLATVEGFAALRRWLATQETSYLDNRIR-KYQSYS 481
           G   E++  +   +   G      +   T + + AL   +  +   ++   +  +  S +
Sbjct: 503 GPPPERLEKLRAFLGELGLSLHKGKDGPTPKDYQALLASIKDRPDYHVIQTVMLRSLSQA 562

Query: 482 EIGNQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHI----------------LGKA 525
                   HF +  + Y  +TSPIR+Y D++ HR +++ I                + KA
Sbjct: 563 VYSADNQGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRSVIHSKQNTPHVKRAGAMTIPKA 622

Query: 526 PVQTPDET----VGEELALHRKHHKIAERNVADWLYARTLAD 563
            +   DE     +GE+ ++  +    A R+V +WL    + D
Sbjct: 623 RIYPYDEAALEQLGEQCSMSERRADEATRDVVNWLKCEFMKD 664