Pairwise Alignments

Query, 678 a.a., exoribonuclease 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 773 a.a., 3'-to-5' exoribonuclease RNase R from Variovorax sp. SCN45

 Score =  155 bits (392), Expect = 7e-42
 Identities = 153/551 (27%), Positives = 251/551 (45%), Gaps = 38/551 (6%)

Query: 19  LPKKEGTIKASDKGFGFLEVDS-KTSYFVPPPYMKKCMHGDKVVAFIRTENEREVAEPS- 76
           L + EGT++    G GF++ D  +   ++PP  M+  +H D+V A +  ++ R   E   
Sbjct: 20  LDEFEGTVQGHRDGHGFVQRDDGEADIYLPPNEMRAVLHKDRVKARVVRQDRRGRPEGRV 79

Query: 77  -ELIEQSLTRFIGRVKLFKGKLNVAPDHPQLKKLSLKAKTKKGLNEADFQEGDWVVAHLV 135
            E++E+S    IGR+    G   VAP+  +  +  L  K   G  +     G  VV  L 
Sbjct: 80  VEIVERSEQPIIGRLLHEGGIWLVAPEDKRYGQDVLIPKGATGPAKV----GQVVVVQLT 135

Query: 136 RHP-LKGDD-GFFVQISHKITDANDKIAPWWVTLAENDLPN-------SEPAGIDDWQLK 186
             P L G   G   ++  +I D   +I    + + +  +P+       +E   + + +++
Sbjct: 136 EPPALFGQPVGRVKEVLGEIDDPGMEIE---IAVRKYGVPHEFSAECLAEAKALPE-KVR 191

Query: 187 DDADLVREDLTALPFVTIDGESTKDMDDALYAQQLPNG---DFALTIAIADPTAYITPED 243
                 R DLT +P VTIDGE  +D DDA+Y +    G    + L +AIAD +AY+    
Sbjct: 192 PADKKGRVDLTDIPLVTIDGEDARDFDDAVYCEPAKVGRGKGWRLLVAIADVSAYVQTGS 251

Query: 244 EMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRKDGVIGDDIR 303
            +D  A +R  ++Y P R IPMLP  L++ LCSL     R  + C + +  DG I    +
Sbjct: 252 GIDIDAYDRATSVYFPRRVIPMLPEKLSNGLCSLNPEVERLCMVCDMLVAADGEI-YAYQ 310

Query: 304 FFAANIKSHARLVYDHVSDWLETGSSEQWQPSEEIAQVVRDLYAFSQARANWRETHAVVF 363
           F+ A + SHAR  Y  V+  L      +    ++  + + +L    +A    R     V 
Sbjct: 311 FYPAVMFSHARFTYTEVAAILGNTRGPEAAKRKDRVKDLLNLADVYKALLKQRGKRGAVD 370

Query: 364 PDRPDYRFELSADNDVVAIHADMRRTANRLVEESMITANICAGKTLQTTFGFGVFNTHAG 423
            +  + +        +  I    R  A+RL+EE+M+ AN+C+   +      G+F  H G
Sbjct: 371 FETTETQIICDDAGRIEKIVPRTRNEAHRLIEEAMLAANVCSADFIAEGKHPGLFRVHEG 430

Query: 424 FKAEK---MADVVELMAVNGAPNADAETLATVEGFAALRRWLATQETSYLDNRIRKYQSY 480
              EK   +   ++ M V  +   D +         A +     Q+   +  R  +   Y
Sbjct: 431 PTPEKKEILRGYLKAMGVGLSITDDPKPGEFQAIAEATKERPDAQQIHTMLLRSMQQAIY 490

Query: 481 SEIGNQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHILGKAPVQTPD-ETVGEELA 539
           + I +    HF +  + Y  +TSPIR+Y D++ HR++KA ILGK   Q P   T GE   
Sbjct: 491 TPINS---GHFGLAYEAYTHFTSPIRRYPDLLVHRVIKA-ILGKTRYQLPMLPTPGE--- 543

Query: 540 LHRKHHKIAER 550
               H K+A+R
Sbjct: 544 ---AHAKLAKR 551