Pairwise Alignments

Query, 678 a.a., exoribonuclease 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 804 a.a., '3'-to-5' exoribonuclease RNase R' transl_table=11 from Sphingobium sp. HT1-2

 Score =  144 bits (364), Expect = 1e-38
 Identities = 145/572 (25%), Positives = 247/572 (43%), Gaps = 90/572 (15%)

Query: 57  GDKVVAFIRTENEREVAEPSELIEQSLTRFIGRVK-LFKGKLNVAPDHPQLKK---LSLK 112
           GD+++A      +  +A P + + ++    +G V+ +  GKL + P   +++K   +S  
Sbjct: 132 GDRILARTEEAGKGWLAHPMKKLAKATEMLLGVVEEMADGKLWLRPVDKRIRKDTPISDI 191

Query: 113 AKTKKGLNEADFQEGDWVVAHLVRHPLKGDDGFFVQISHKITDA-NDKIAPW---WVTLA 168
              KKG         D V+A     P +        IS ++TD   D  AP     + + 
Sbjct: 192 GTAKKG---------DLVLAEPTGRPPR--------ISARVTDILGDPFAPRSFSLIAIH 234

Query: 169 ENDLPNSEPAGIDD-------WQLKDDADLVREDLTALPFVTIDGESTKDMDDALYA--- 218
           ++ +P+  P  +++         L +D    REDL  LP V ID    +D DDA++A   
Sbjct: 235 KHGIPHVFPEAVEEEAVTASKLPLHEDK---REDLRHLPIVAIDPVDARDHDDAVWAAPD 291

Query: 219 -QQLPNGDFALTIAIADPTAYITPEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSL 277
                 G +   +AIAD + Y+ P   +D+ AR+RG ++Y P   +PMLP  L+ ++CSL
Sbjct: 292 EDPTNEGGYKAIVAIADVSYYVRPGSALDREARKRGNSVYFPDLVVPMLPHQLSSDMCSL 351

Query: 278 MENQVRPALCCSVTIRKDGVIGDDIRFFAANIKSHARLVYDHVSDWLETGSSEQWQPSEE 337
              Q R A+ C + I   G +    RF  A I+  A L Y++    ++  SS + +P E 
Sbjct: 352 RAGQDRAAMACHLVIDAQGKV-KSFRFSRAIIRVAAVLAYENAQAAIDALSSVRPEPVEG 410

Query: 338 ----------------------------IAQVVRDLYAFSQARANWRETHAVVFPDRPDY 369
                                       +   ++ L+A        RE    +  D P+ 
Sbjct: 411 QGRAEGEAASPAAQQAASTSLSPNGVDLVEHALKPLWACWALLRKAREKRDPLALDLPER 470

Query: 370 RFELSADNDVVAIHADMRRTANRLVEESMITANICAGKTLQTTFGFGVFNTHAGFKAEKM 429
           R  L     +V++    R  A+ L+E+ MI AN+ A K L+      ++  H     +K+
Sbjct: 471 RVVLDEWGKIVSVAVRERLDAHMLIEDYMIAANVAAAKALEAKKAPVMYRVHETPGRDKL 530

Query: 430 ADVVELMAVNGAPNADAETLATVEGFAALRRWLATQETSYLDNRIRKYQSYSEIGNQPLP 489
             + E +A      A  + +        +++   ++E   +  +I + Q+ +    Q + 
Sbjct: 531 VALKEYLATFDIDFALGQVIRPSTFNQLIKKVGESEEKEQIMTQILRSQTQAYYAPQNMG 590

Query: 490 HFAMGLDVYATWTSPIRKYGDMINHR-LLKAHIL------GKAPVQTPDET--------- 533
           HF + L  YA +TSPIR+Y D++ HR L+ A+ L      GKA    PD +         
Sbjct: 591 HFGLALGSYAHFTSPIRRYADLLVHRALVGAYDLELPAPKGKA---IPDRSSLSQEDYEN 647

Query: 534 ---VGEELALHRKHHKIAERNVADWLYARTLA 562
              VGE ++ H +    AER   D   A  L+
Sbjct: 648 MGRVGEMISGHERRAMEAERETIDRYVAAFLS 679