Pairwise Alignments

Query, 678 a.a., exoribonuclease 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 857 a.a., exoribonuclease R from Pseudomonas putida KT2440

 Score =  175 bits (443), Expect = 9e-48
 Identities = 174/698 (24%), Positives = 298/698 (42%), Gaps = 68/698 (9%)

Query: 24  GTIKASDKGFGFL-EVDSKTSYFVPPPYMKKCMHGDKVVAFIRTENEREVAEPS--ELIE 80
           G +     GFGFL   D     F+ P  M+    GD+ +A +   + R   E    E+I 
Sbjct: 91  GRVSGHRDGFGFLIPDDGSEDLFLSPSQMRLVFDGDRGLARVSGVDRRGRREGVLVEVIS 150

Query: 81  QSLTRFIGRVKLFKGKLNVAPDHPQLKKLSLKAKTKKGLNEADFQEGDWVVAHLVRHPLK 140
           ++    +GR     G   V PD+P++++  L    + G      + G +V   +   P  
Sbjct: 151 RAHESVVGRYFEEGGIGYVTPDNPKIQQEVLVTAGRNG----GAKIGQFVEIKITHWPTP 206

Query: 141 GDDGFFVQISHKITDANDKIAPWW---VTLAENDLPNSEPAGIDDWQLKDDADLV----- 192
                F      +    + +AP     V L   D+P+  P  +     K  +++      
Sbjct: 207 R----FQPQGDVVEVIGNYMAPGMEIDVALRSYDIPHVWPNDVVKEARKFRSEVEEKDKE 262

Query: 193 -REDLTALPFVTIDGESTKDMDDALYAQQLP-----NGDFALTIAIADPTAYITPEDEMD 246
            R DL  LPFVTIDGE  +D DDA+Y + L      +G + L +AIAD ++Y+     +D
Sbjct: 263 KRVDLRHLPFVTIDGEDARDFDDAVYCEPLGKLRLFSGGWRLYVAIADVSSYVRLGSALD 322

Query: 247 KVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRKDGVIGDDIRFFA 306
             A++RG ++Y P R +PMLP +L++ LCSL  +  R A+ C +T+ K G +  D +F+ 
Sbjct: 323 VEAQQRGNSVYFPERVVPMLPEELSNGLCSLNPHVDRLAMVCEMTMNKAGQM-VDYQFYE 381

Query: 307 ANIKSHARLVYDHVSDWLETGSSEQWQP-SEEIAQVVRD---LYAFSQARANWRETHAVV 362
             I SHARL Y+ VS  LE   + + +   EE  +VV D   LY   +     R T   +
Sbjct: 382 GVIHSHARLTYNKVSSMLEHSRTREGKALREEYKEVVPDLKNLYNLYKVLVEARHTRGAI 441

Query: 363 FPDRPDYRFELSADNDVVAIHADMRRTANRLVEESMITANICAGKTLQTTFGFGVFNTHA 422
             +  + R     +  +  I   +R  A++L+EE M+ AN+   + LQ      ++  H 
Sbjct: 442 DFETQETRIIFGEERKIAEIRPTVRNDAHKLIEECMLAANVATAEFLQKHGVPALYRVHD 501

Query: 423 GFKAEKMADVVELMAVNGAPNADAETLATVEGFAALRRWLATQETSYLDNRIRKYQSYSE 482
           G   E++  +   +   G      +  +  +  A L       +   +   + +  S + 
Sbjct: 502 GPPPERLEKLRAFLGELGLSLHKGKDPSPKDYQALLASIAGRPDFHLIQTVMLRSLSQAV 561

Query: 483 IGNQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHILGKAPVQTPD----------- 531
              +   HF +  + Y  +TSPIR+Y D++ HR +++ I  K  V TP            
Sbjct: 562 YSTENNGHFGLNYEAYTHFTSPIRRYPDLLVHRAIRSIIRSK--VDTPHVKRAGAMSIPK 619

Query: 532 -----------ETVGEELALHRKHHKIAERNVADWLYARTLADEPAKETRFQAEIFDINR 580
                      E +GE+ ++  +    A R+V +WL    + D   +   F   I  +  
Sbjct: 620 ARIYPYDENTLEQLGEQCSMTERRADEATRDVVNWLKCEFMKDRVGE--TFPGVITAVTG 677

Query: 581 PGMRVRLLENGA-----MAFIPGALILDNKERIECNGEDGTVLIDKEVVYKLGDVLEIVL 635
            G+ V L +        ++ +PG     +       GE           ++LGD +E+ +
Sbjct: 678 FGLFVELTDIYVEGLVHVSALPGDYYHFDPVHHRLAGE------RTGRSFRLGDTIEVKV 731

Query: 636 TEVNQENRSLVGKPTQ-VFADLVSETQTSAEQPAEGAE 672
             V+ + R +  + ++   A  +   Q  A   AE AE
Sbjct: 732 MRVDLDERKIDFEVSEKTLAAPIGRKQRGAAPVAEKAE 769