Pairwise Alignments

Query, 678 a.a., exoribonuclease 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 813 a.a., putative enzyme (VIMSS) from Escherichia coli BW25113

 Score =  181 bits (460), Expect = 9e-50
 Identities = 172/676 (25%), Positives = 292/676 (43%), Gaps = 48/676 (7%)

Query: 1   MFQDNPLLAQLKQ--KIQETLPKKEGTIKASDKGFGFLEVDS-KTSYFVPPPYMKKCMHG 57
           M +D  L+   +Q   + E L   +GT+     G+GFL V+  K   ++    MK C+HG
Sbjct: 62  MERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHG 121

Query: 58  DKVVA--FIRTENEREVAEPSELIEQSLTRFIGRVKLFKGKLNVAPDHPQLK-KLSLKAK 114
           D+V+A         R  A    ++    ++ +GR     G   V PD  +L   + +   
Sbjct: 122 DQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPD 181

Query: 115 TKKGLNEADFQEGDWVVAHLVRHPLKGDDGFFVQISHKITDANDKIAPWWVTLAENDLPN 174
              G      + G  VV  L + P +       +I   + D         + L  +++P 
Sbjct: 182 QIMGA-----RMGFVVVVELTQRPTRRTKAVG-KIVEVLGDNMGTGMAVDIALRTHEIPY 235

Query: 175 SEPAGIDDW------QLKDDADLVREDLTALPFVTIDGESTKDMDDALYAQQLPNGDFAL 228
             P  ++        ++ ++A   R DL  LP VTIDGE  +D DDA+Y ++   G + L
Sbjct: 236 IWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRL 295

Query: 229 TIAIADPTAYITPEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCC 288
            +AIAD + Y+ P   +D+ AR RG ++Y P + IPMLP  L++ LCSL     R  + C
Sbjct: 296 WVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVC 355

Query: 289 SVTIRKDGVIGDDIRFFAANIKSHARLVYDHVSDWLETGSS--EQWQPSEEIAQVVRDLY 346
            +T+   G +    +F+ A + SHARL Y  V   L+      EQ+ P  +  + + +LY
Sbjct: 356 EMTVSSKGRL-TGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLY 414

Query: 347 AFSQARANWRETHAVVFPDRPDYRFELSADNDVVAIHADMRRTANRLVEESMITANICAG 406
              +     RE    +  +  + +F  +A+  +  I    R  A++L+EE MI ANI A 
Sbjct: 415 ---KVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAA 471

Query: 407 KTLQTTFGFGVFNTHAGFKAEKMADVVELMAVNGAPNADAETLATVEGFAALRRWLATQE 466
           + ++      +F  H     E +     ++A  G            +    L       +
Sbjct: 472 RFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPD 531

Query: 467 TSYLDNRIRKYQSYSEIGNQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHILGKAP 526
              L   + +    +    +   HF + L  YA +TSPIR+Y D+  HR +K ++L K  
Sbjct: 532 AEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIK-YLLAKEQ 590

Query: 527 VQTPDET--------------VGEELALHRKHHKIAERNVADWLYARTLADEPAKETRFQ 572
               + T              +G+  ++  +    A R+VADWL    + D+      F+
Sbjct: 591 GHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNV--FK 648

Query: 573 AEIFDINRPGMRVRLLENGAMAFIPGALILDNKERIECNGED-GTVLIDKE--VVYKLGD 629
             I  +   G  VRL +     FI G + + + +      +  G  L+ +     Y+LGD
Sbjct: 649 GVISSVTGFGFFVRLDD----LFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGD 704

Query: 630 VLEIVLTEVNQENRSL 645
            +E+ +  VN + R +
Sbjct: 705 RVEVRVEAVNMDERKI 720