Pairwise Alignments

Query, 678 a.a., exoribonuclease 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 818 a.a., ribonuclease R from Erwinia tracheiphila SCR3

 Score =  174 bits (442), Expect = 1e-47
 Identities = 176/680 (25%), Positives = 298/680 (43%), Gaps = 55/680 (8%)

Query: 1   MFQDNPLLAQLKQ--KIQETLPKKEGTIKASDKGFGFLEVD-SKTSYFVPPPYMKKCMHG 57
           M +D  L+   +Q   + E L    G +     GFGFL V+ SK   ++    MK CMHG
Sbjct: 62  MERDGQLVFTRRQCYALPERLDLLRGKVIGHRDGFGFLRVEGSKDDLYLAAEQMKMCMHG 121

Query: 58  DKVVAFIRTENE--REVAEPSELIEQSLTRFIGRVKLFKGKLNVAPDHPQLKKLSLKAKT 115
           D ++A     +   R  A    ++E    + +GR     G   V PD  +L    L  + 
Sbjct: 122 DVILAQSTGADRKGRREARVVRVLEPRNNQIVGRYFTEAGVGFVVPDDSRLSFDILIPQ- 180

Query: 116 KKGLNEADFQEGDWVVAHLVRHPLKGDDGFFVQISHKITDANDKIAPWWVTLAENDLPNS 175
            + LN A  + G  VV  L + P +       Q+   + D         + L  +D+P+ 
Sbjct: 181 -EALNGA--RMGFVVVVELTQRPTRRSKAVG-QVVEVLGDNMGTGMAVEMALRTHDIPHV 236

Query: 176 EPAGIDDW------QLKDDADLVREDLTALPFVTIDGESTKDMDDALYAQQLPNGDFALT 229
            P  + +       ++ + A   R DL  LP VTIDGE  +D DDA++ ++  +G + L 
Sbjct: 237 WPEALQNQIATLKEEVPEKAKAGRVDLRDLPLVTIDGEDARDFDDAVFCERKRSGGWRLW 296

Query: 230 IAIADPTAYITPEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCS 289
           +AIAD + Y+ P   +D  A  RG ++Y P + +PMLP  L++ LCSL     R  + C 
Sbjct: 297 VAIADVSYYVRPGTPLDDEAVNRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCE 356

Query: 290 VTIRKDG-VIGDDIRFFAANIKSHARLVYDHVSDWL--ETGSSEQWQPSEEIAQVVRDLY 346
           +TI   G +IG   + + A + S ARL Y+ V   L  +    +Q+QP  +  + +  +Y
Sbjct: 357 MTISATGKLIG--YKHYEAVMNSWARLTYNKVWSILLGDQPLRKQYQPFVKDLEELHRMY 414

Query: 347 AFSQARANWRETHAVVFPDRPDYRFELSADNDVVAIHADMRRTANRLVEESMITANICAG 406
              +     RE    +  +  + +F  +A+  +  +    R  A++L+EE MI ANI + 
Sbjct: 415 LVLEKA---REQRGGISFETDEAKFIFNAERRIERVEQVSRNDAHKLIEECMILANIASA 471

Query: 407 KTLQTTFGFGVFNTHAGFKAEKMADVVELMAVNGAPNADAETLATVEGFAALRRWLATQE 466
           + ++      +F  H     E +     ++   G           ++  A L +  +  +
Sbjct: 472 RYVEKNQEPALFRDHDRPSEENIKSFRSVLNELGLTLGGGLKPHPLDYAALLMQIASRPD 531

Query: 467 TSYLDNRIRKYQSYSEIGNQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHILGKAP 526
              L   + +    +    +   HF + L  YA +TSPIR+Y D++ HR +K ++L K  
Sbjct: 532 AEMLQTMLLRSMKQAVYDPENRGHFGLALSSYAHFTSPIRRYPDLLLHRAIK-YLLAKEN 590

Query: 527 VQTPDETV---------------GEELALHRKHHKIAERNVADWLYARTLADEPAKETRF 571
                 T                G+  ++  +    A R+VADWL    + D+  +   F
Sbjct: 591 GTLEGNTTPTGGFHYDLQQMLQFGQHCSMTERRADEAARDVADWLKCDFMQDQVGE--TF 648

Query: 572 QAEIFDINRPGMRVRLLENGAMAFIPGAL---ILDNK-ERIECNGEDGTVLIDKE--VVY 625
              I  +   G  VRL +     FI G +    LDN   R +  G+    LI +     Y
Sbjct: 649 TGVISSVTGFGFFVRLTD----LFIDGLVHVSTLDNDYYRFDAIGQR---LIGESGGKTY 701

Query: 626 KLGDVLEIVLTEVNQENRSL 645
           +LGD++ + +  V+ + R +
Sbjct: 702 RLGDMVNVRVDAVHMDERKI 721