Pairwise Alignments

Query, 678 a.a., exoribonuclease 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 814 a.a., ribonuclease R from Enterobacter asburiae PDN3

 Score =  186 bits (471), Expect = 5e-51
 Identities = 174/677 (25%), Positives = 297/677 (43%), Gaps = 50/677 (7%)

Query: 1   MFQDNPLLAQLKQ--KIQETLPKKEGTIKASDKGFGFLEVDS-KTSYFVPPPYMKKCMHG 57
           M +D  L+   +Q   + E L   +GT+     GFGFL V+  K   ++    MK C+HG
Sbjct: 62  MERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGFGFLRVEGRKDDLYLSSEQMKMCIHG 121

Query: 58  DKVVA--FIRTENEREVAEPSELIEQSLTRFIGRVKLFKGKLNVAPDHPQLK-KLSLKAK 114
           D+++A         R  A    ++    ++ +GR     G   V PD  +L   + +  +
Sbjct: 122 DQILAQPLGADRKGRREARVVRVLVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPPE 181

Query: 115 TKKGLNEADFQEGDWVVAHLVRHPLKGDDGFFVQISHKITDANDKIAPWWVTLAENDLPN 174
              G      + G  VV  L + P +       +I   + D         + L  +++P 
Sbjct: 182 EVMGA-----RMGFVVVVELTQRPTRRTKAVG-KIVEVLGDNMGTTMAVDMALRTHEIPY 235

Query: 175 SEPAGIDDW------QLKDDADLVREDLTALPFVTIDGESTKDMDDALYAQQLPNGDFAL 228
             P  +++       ++ +++ + R DL +LP VTIDGE  +D DDA+Y ++   G + L
Sbjct: 236 IWPKAVEEQIESLREEVPEESKVGRVDLRSLPLVTIDGEDARDFDDAVYCEKKRGGGWRL 295

Query: 229 TIAIADPTAYITPEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCC 288
            +AIAD + Y+ P   +D  AR RG ++Y P + +PMLP  L++ LCSL     R  + C
Sbjct: 296 WVAIADVSYYVRPHTPLDNEARSRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVC 355

Query: 289 SVTIRKDGVIGDDIRFFAANIKSHARLVYDHVSDWLETGSS--EQWQPSEEIAQVVRDLY 346
            +TI   G +    +F+ A + SHARL Y  V   L+      EQ+ P  +  + + +LY
Sbjct: 356 EMTISTKGRL-TGYKFYEAVMSSHARLTYTKVWHMLQGDQDLREQYAPLVKHIEELHNLY 414

Query: 347 -AFSQARANWRETHAVVFPDRPDYRFELSADNDVVAIHADMRRTANRLVEESMITANICA 405
               QA    RE    +  +  + +F  +A+  +  I    R  A++L+EE MI ANI A
Sbjct: 415 KTLDQA----REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISA 470

Query: 406 GKTLQTTFGFGVFNTHAGFKAEKMADVVELMAVNGAPNADAETLATVEGFAALRRWLATQ 465
            + ++      +F  H     E +     ++A  G            +    L       
Sbjct: 471 ARFVEKAKEPALFRIHDKPTTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESIGDRP 530

Query: 466 ETSYLDNRIRKYQSYSEIGNQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHILGKA 525
           +   L   + +    +    +   HF + L  YA +TSPIR+Y D+  HR +K ++L + 
Sbjct: 531 DAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIK-YLLAQE 589

Query: 526 PVQTPDET--------------VGEELALHRKHHKIAERNVADWLYARTLADEPAKETRF 571
                + T              +G+  ++  +    A R+VADWL    + D+      F
Sbjct: 590 QGHKGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNV--F 647

Query: 572 QAEIFDINRPGMRVRLLENGAMAFIPGALILDNKERIECNGED-GTVLIDKE--VVYKLG 628
           +  I  +   G  VRL E     FI G + + + +      +  G  LI +     Y+LG
Sbjct: 648 KGVIASVTGFGFFVRLDE----LFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLG 703

Query: 629 DVLEIVLTEVNQENRSL 645
           D +E+ +  VN ++R +
Sbjct: 704 DRVEVKVEAVNMDDRKI 720