Pairwise Alignments

Query, 678 a.a., exoribonuclease 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 644 a.a., exoribonuclease II from Enterobacter asburiae PDN3

 Score =  671 bits (1732), Expect = 0.0
 Identities = 342/651 (52%), Positives = 456/651 (70%), Gaps = 11/651 (1%)

Query: 1   MFQDNPLLAQLKQKIQETLPKKEGTIKASDKGFGFLEVDSKTSYFVPPPYMKKCMHGDKV 60
           MFQDNPLLAQLKQ++    P+ EG +KA++KGFGFLEVD++ SYF+PPP MKK MHGD+V
Sbjct: 1   MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRV 60

Query: 61  VAFIRTENEREVAEPSELIEQSLTRFIGRVKLFKGKLNVAPDHPQLKKLSLKAKTKKGLN 120
           +A I TE +RE AEP ELIE  LTRF+G+V+    +L + PDHP LK  ++  +  +G+ 
Sbjct: 61  MAVIHTEKDRESAEPEELIEPFLTRFVGKVQRKDDRLAIVPDHPLLKD-AIPCRAARGV- 118

Query: 121 EADFQEGDWVVAHLVRHPLKGDDGFFVQISHKITDANDKIAPWWVTLAENDLPNSEPAGI 180
           E DF+EGDW VA + RHPLKGD GF+ +++  IT   D   PWWVTLA ++L    P G+
Sbjct: 119 EHDFKEGDWAVAEMRRHPLKGDRGFYAELTQFITFGADHFVPWWVTLARHNLEKEAPNGV 178

Query: 181 DDWQLKDDADLVREDLTALPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIADPTAYIT 240
              +++D+  L R DLTAL FVTID  ST+DMDDALYA++  +G   LT+AIADPTA+I 
Sbjct: 179 AT-EMQDEG-LTRRDLTALEFVTIDSASTEDMDDALYAEEGADGKLHLTVAIADPTAWIA 236

Query: 241 PEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRKDGVIGD 300
              ++D  A+ R FT YLPG NIPMLPR+L+D+LCSL  N+VRP L C +TI  DG I D
Sbjct: 237 EGSKLDDAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRPNEVRPVLACRMTIAADGAIED 296

Query: 301 DIRFFAANIKSHARLVYDHVSDWLE-TGSSEQWQP-SEEIAQVVRDLYAFSQARANWRET 358
           DI FFAA I+S A+L YD+VSDWLE TGS   W+P S+ IA  +R L+     R  WR+T
Sbjct: 297 DIEFFAATIESKAKLAYDNVSDWLENTGS---WKPESDAIAAQIRLLHRICLNRGEWRKT 353

Query: 359 HAVVFPDRPDYRFELSADNDVVAIHADMRRTANRLVEESMITANICAGKTLQTTFGFGVF 418
           HA+VF DRPDYRF L    +V+ I A+ RR ANR+VEE+MI+ANICA + L+   GFG++
Sbjct: 354 HALVFKDRPDYRFVLGEKGEVLDIVAEPRRIANRIVEEAMISANICAARVLRDKLGFGIY 413

Query: 419 NTHAGFKAEKMADVVELMAVNGAPNADAETLATVEGFAALRRWLATQETSYLDNRIRKYQ 478
           N H GF       +  L+  +   + D E + T+ GF  LRR L  Q + +LD+RIR++Q
Sbjct: 414 NVHTGFDPANTEALAALLKTHDV-HVDPEEVLTLPGFCKLRRELDAQPSGFLDSRIRRFQ 472

Query: 479 SYSEIGNQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHILGKAPVQTPDETVGEEL 538
           S++EI  +P PHF +GL+ YATWTSPIRKYGDM+NHRLLKA I G+  +  P E    ++
Sbjct: 473 SFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAIIKGET-IARPQEDTTLQM 531

Query: 539 ALHRKHHKIAERNVADWLYARTLADEPAKETRFQAEIFDINRPGMRVRLLENGAMAFIPG 598
           A  R+ +++AER+V DWLYAR L D+   +TRF AEI DI+R GMRVRL++NGA+AFIP 
Sbjct: 532 ADRRRLNRMAERDVGDWLYARFLQDKAGTDTRFAAEIIDISRGGMRVRLVDNGAVAFIPA 591

Query: 599 ALILDNKERIECNGEDGTVLIDKEVVYKLGDVLEIVLTEVNQENRSLVGKP 649
             +   ++ + C+ E+GTV I  E VYK+ DV+++ + EV  E RS++ +P
Sbjct: 592 PFLHAVRDEMVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARP 642