Pairwise Alignments

Query, 678 a.a., exoribonuclease 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 825 a.a., ribonuclease R from Dickeya dianthicola ME23

 Score =  184 bits (467), Expect = 1e-50
 Identities = 183/713 (25%), Positives = 311/713 (43%), Gaps = 67/713 (9%)

Query: 1   MFQDNPLLAQLKQ--KIQETLPKKEGTIKASDKGFGFLEVDS-KTSYFVPPPYMKKCMHG 57
           M +D  L+   +Q   + E L    GT+     G+GFL V+  K   ++    MK  +HG
Sbjct: 62  MERDGQLVFTRRQCYALPEKLDLLRGTVLGHRDGYGFLRVEGRKDDLYLSAEQMKTVIHG 121

Query: 58  DKVVAFIRTENEREVAEPS--ELIEQSLTRFIGRVKLFKGKLNVAPDHPQLK-KLSLKAK 114
           D V+A    E+ R   E     ++E    + +GR     G   V PD  +L   + + ++
Sbjct: 122 DVVLAQPLGEDRRGRREGRIVRILEPRTNQIVGRYFTEAGTGFVVPDDSRLSFDILIPSE 181

Query: 115 TKKGLNEADFQEGDWVVAHLVRHPLKGDD--GFFVQISHKITDANDKIAPWWVTLAENDL 172
              G      + G  VV  L +   +     G  V+I   + D         + L  +++
Sbjct: 182 FIAGA-----RMGSVVVVELTQRATRRTKAIGKIVEI---LGDNMGTGLAVDIALRTHEI 233

Query: 173 PNSEPAGIDDWQLKDDADLVRED-------LTALPFVTIDGESTKDMDDALYAQQLPNGD 225
           P+S P  +++ Q+ D AD V ED       L +LP VTIDGE  +D DDA+Y ++   G 
Sbjct: 234 PHSWPPKVEE-QVSDLADEVPEDAKKGRIDLRSLPLVTIDGEDARDFDDAVYCEKKRGGG 292

Query: 226 FALTIAIADPTAYITPEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPA 285
           + L +AIAD + Y+ P   +D  AR RG ++Y P + +PMLP  L++ LCSL     R  
Sbjct: 293 WRLWVAIADVSYYVRPGTALDHEARARGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLC 352

Query: 286 LCCSVTIRKDGVIGDDIRFFAANIKSHARLVYDHVSDWLETGSS--EQWQPSEEIAQVVR 343
           + C +T+   G +     F+ A + SHARL Y  V   L+   +  E +QP   +   + 
Sbjct: 353 MVCEMTVSTQGKL-SGYTFYEAVMSSHARLTYTKVWSILQGDEALREHYQP---LVAPLE 408

Query: 344 DLYAFSQARANWRETHAVVFPDRPDYRFELSADNDVVAIHADMRRTANRLVEESMITANI 403
           +L+   +   + RE    +  +  + +F  +A+  +  + A +R  A++L+EE MI ANI
Sbjct: 409 ELHQMYKVLDHAREVRGGIAFETEEAKFIFNAERRIERVEAVVRNDAHKLIEECMILANI 468

Query: 404 CAGKTLQTTFGFGVFNTHAGFKAEKMADVVELMAVNG---------APNADAETLATVEG 454
            A K ++      +F  H     + +  +  ++   G          P   AE + ++ G
Sbjct: 469 SAAKFVEKNEEPALFRVHDQPSEDHVLALRSVLGELGLTLKGGMKPQPKDYAELMNSIAG 528

Query: 455 FAALRRWLATQETSYLDNRIRKYQSYSEIGNQPLPHFAMGLDVYATWTSPIRKYGDMINH 514
                      +   L   + +    +    +   HF + L  Y  +TSPIR+Y D+  H
Sbjct: 529 ---------RPDHEMLQTMLLRSMKQAVYDPENRGHFGLALTSYGHFTSPIRRYPDLSLH 579

Query: 515 RLLKAHILGKAPVQTPDE----------TVGEELALHRKHHKIAERNVADWLYARTLADE 564
           R +K  +  +    T              +GE  ++  +    A R+VADWL    + D 
Sbjct: 580 RAIKYLLSDRKACWTHSGGWHADFNEMLQLGEHCSMTERRADEATRDVADWLKCDFMQDH 639

Query: 565 PAKETRFQAEIFDINRPGMRVRLLENGAMAFIPGAL---ILDNKERIECNGEDGTVLIDK 621
             +   F   I  +   G  VRL +     FI G +    LDN      N     +   +
Sbjct: 640 VGE--AFTGIISSVTGFGFFVRLND----LFIDGLVHVSTLDNDYYRYDNVGQRLIGESR 693

Query: 622 EVVYKLGDVLEIVLTEVNQENRSLVGKPTQVFADLVSETQTSAEQPAEGAENN 674
             VY+LGD ++I +  V+ + R +          +  E +T+ ++  +GA ++
Sbjct: 694 GQVYRLGDEVQIRVEAVHMDERKIDFALLSSTRKVRGEGKTARDRVKKGAASD 746