Pairwise Alignments

Query, 678 a.a., exoribonuclease 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 643 a.a., exoribonuclease II from Dickeya dianthicola ME23

 Score =  671 bits (1732), Expect = 0.0
 Identities = 339/654 (51%), Positives = 454/654 (69%), Gaps = 18/654 (2%)

Query: 1   MFQDNPLLAQLKQKIQETLPKKEGTIKASDKGFGFLEVDSKTSYFVPPPYMKKCMHGDKV 60
           MFQDNPLLAQLKQ++    P+ EG +KA+DKGFGFLE D++ SYF+PPP MKK MHGD++
Sbjct: 1   MFQDNPLLAQLKQQLHSQTPRAEGIVKATDKGFGFLEADAQKSYFIPPPQMKKVMHGDRI 60

Query: 61  VAFIRTENEREVAEPSELIEQSLTRFIGRVKLFKGKLNVAPDHPQLKKLSLKAKTKKGLN 120
           +A + TE ERE+AEP  L+E  LTRF+GRV+    +L++ PDHP LK  ++  +  +G+ 
Sbjct: 61  IAALHTEKEREIAEPETLVEPFLTRFVGRVQKKDDRLSIVPDHPLLKD-AIPCRPARGV- 118

Query: 121 EADFQEGDWVVAHLVRHPLKGDDGFFVQISHKITDANDKIAPWWVTLAENDL----PNSE 176
           E DF+ GDW VA + RHPLKGD GFF  ++H IT  +D +APWWVTL+ ++L    P+++
Sbjct: 119 EQDFKAGDWAVAEMRRHPLKGDRGFFADLTHYITTGDDPLAPWWVTLSRHNLERIAPDAD 178

Query: 177 PAGIDDWQLKDDADLVREDLTALPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIADPT 236
            A ++D QL+      REDLT L FVTID  ST+DMDDALY Q   +G   +T+AIADPT
Sbjct: 179 AAELNDGQLE------REDLTGLDFVTIDSASTEDMDDALYVQDNGDGTLDMTVAIADPT 232

Query: 237 AYITPEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRKDG 296
           AY+  + E+D +AR+R FT YLPG NIPMLPR L+D++CSL  N+ RP L C +TI  DG
Sbjct: 233 AYVRADSELDAIARQRAFTNYLPGFNIPMLPRHLSDDICSLRPNERRPVLACRMTIAADG 292

Query: 297 VIGDDIRFFAANIKSHARLVYDHVSDWLETGSSEQWQP-SEEIAQVVRDLYAFSQARANW 355
            +   IRFFAA I+S A+LVYD VS+WLE      WQP S+ IA  +R L+    AR  W
Sbjct: 293 AL-SQIRFFAAWIESRAKLVYDDVSNWLE--QQGDWQPESDNIADQIRLLHRVCLARNAW 349

Query: 356 RETHAVVFPDRPDYRFELSADNDVVAIHADMRRTANRLVEESMITANICAGKTLQTTFGF 415
           R THA+VF DRPDYRF L  + +V+ I  + RR ANR+VEE+MI AN+CA + L+   GF
Sbjct: 350 RTTHALVFRDRPDYRFLLGENGEVLDIVTEPRRIANRIVEEAMIAANVCAAQVLRDALGF 409

Query: 416 GVFNTHAGFKAEKMADVVELMAVNGAPNADAETLATVEGFAALRRWLATQETSYLDNRIR 475
           GV+N H GF    +   V ++  NG   ADA+ L T++GF  LRR L  Q T +LD+RIR
Sbjct: 410 GVYNVHNGFDPVSIDQAVAVLESNGI-QADAQQLLTLDGFCVLRRELDAQPTQFLDSRIR 468

Query: 476 KYQSYSEIGNQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHILGKAPVQTPDETVG 535
           ++Q+++EI   P PHF +GL+ YATWTSPIRKYGDM+NHRLLKA ++   P + P + V 
Sbjct: 469 RFQTFAEISTAPGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKA-VITHTPAEKPQDEVT 527

Query: 536 EELALHRKHHKIAERNVADWLYARTLADEPAKETRFQAEIFDINRPGMRVRLLENGAMAF 595
            +LA  R+ +++AER+V+DWLYAR L D+   + RF  EI D+NR G+RVRLLENGA AF
Sbjct: 528 LQLAERRRLNRMAERDVSDWLYARFLKDKAGTDARFTGEIMDVNRGGLRVRLLENGATAF 587

Query: 596 IPGALILDNKERIECNGEDGTVLIDKEVVYKLGDVLEIVLTEVNQENRSLVGKP 649
           IP + I   ++ + C+ + G V +  E VY+  D L ++LTEV  E R+++ KP
Sbjct: 588 IPASFIHAVRDELVCSQDTGIVTVKGEPVYRQSDTLTVMLTEVRLETRNIIAKP 641