Pairwise Alignments

Query, 678 a.a., exoribonuclease 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 644 a.a., ribonuclease II from Escherichia coli BL21

 Score =  681 bits (1756), Expect = 0.0
 Identities = 343/650 (52%), Positives = 456/650 (70%), Gaps = 9/650 (1%)

Query: 1   MFQDNPLLAQLKQKIQETLPKKEGTIKASDKGFGFLEVDSKTSYFVPPPYMKKCMHGDKV 60
           MFQDNPLLAQLKQ++    P+ EG +KA++KGFGFLEVD++ SYF+PPP MKK MHGD++
Sbjct: 1   MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI 60

Query: 61  VAFIRTENEREVAEPSELIEQSLTRFIGRVKLFKGKLNVAPDHPQLKKLSLKAKTKKGLN 120
           +A I +E ERE AEP EL+E  LTRF+G+V+    +L + PDHP LK  ++  +  +GLN
Sbjct: 61  IAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKD-AIPCRAARGLN 119

Query: 121 EADFQEGDWVVAHLVRHPLKGDDGFFVQISHKITDANDKIAPWWVTLAENDLPNSEPAGI 180
             +F+EGDW VA + RHPLKGD  F+ +++  IT  +D   PWWVTLA ++L    P G+
Sbjct: 120 H-EFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLAHHNLEKEAPDGV 178

Query: 181 DDWQLKDDADLVREDLTALPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIADPTAYIT 240
               L  D  LVREDLTAL FVTID  ST+DMDDAL+A+ LP+    L +AIADPTA+I 
Sbjct: 179 ATEML--DEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIA 236

Query: 241 PEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRKDGVIGD 300
              ++DK A+ R FT YLPG NIPMLPR+L+D+LCSL  N+VRP L C +T+  DG I D
Sbjct: 237 EGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIED 296

Query: 301 DIRFFAANIKSHARLVYDHVSDWLETGSSEQWQP-SEEIAQVVRDLYAFSQARANWRETH 359
           +I FFAA I+S A+LVYD VSDWLE  ++  W+P SE IA+ VR L    Q R  WR  H
Sbjct: 297 NIEFFAATIESKAKLVYDQVSDWLE--NTGDWKPESEAIAEQVRLLAQICQRRGEWRHNH 354

Query: 360 AVVFPDRPDYRFELSADNDVVAIHADMRRTANRLVEESMITANICAGKTLQTTFGFGVFN 419
           A+VF DRPDYRF L    +V+ I A+ RR ANR+VE++MI ANICA + L+   GFG++N
Sbjct: 355 ALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEDAMIAANICAARVLRDKLGFGIYN 414

Query: 420 THAGFKAEKMADVVELMAVNGAPNADAETLATVEGFAALRRWLATQETSYLDNRIRKYQS 479
            H GF       +  L+  +G  + DAE + T++GF  LRR L  Q T +LD+RIR++QS
Sbjct: 415 VHMGFDPANADALAALLKTHGL-HVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQS 473

Query: 480 YSEIGNQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHILGKAPVQTPDETVGEELA 539
           ++EI  +P PHF +GL+ YATWTSPIRKYGDMINHRLLKA I G+   +  DE +  ++A
Sbjct: 474 FAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDE-ITVQMA 532

Query: 540 LHRKHHKIAERNVADWLYARTLADEPAKETRFQAEIFDINRPGMRVRLLENGAMAFIPGA 599
             R+ +++AER+V DWLYAR L D+   +TRF AEI DI+R GMRVRL++NGA+AFIP  
Sbjct: 533 ERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAP 592

Query: 600 LILDNKERIECNGEDGTVLIDKEVVYKLGDVLEIVLTEVNQENRSLVGKP 649
            +   ++ + C+ E+GTV I  E VYK+ DV+++ + EV  E RS++ +P
Sbjct: 593 FLHAVRDEMVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARP 642