Pairwise Alignments

Query, 678 a.a., exoribonuclease 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 814 a.a., Ribonuclease R from Acinetobacter radioresistens SK82

 Score =  176 bits (446), Expect = 4e-48
 Identities = 169/671 (25%), Positives = 300/671 (44%), Gaps = 52/671 (7%)

Query: 1   MFQDNPLLAQ-LKQKIQETLPKKEGTIKASDKGFGFLEVDSKTSYFVPPPYMKKCMHGDK 59
           M +D  L+    K ++   LP  E T+  + KG G  ++D + + ++P   ++   +GD+
Sbjct: 77  MVRDGQLVKDGFKFQLVADLPTYEATVYINTKGMGIAQIDGQDNLYLPERELRLVFNGDR 136

Query: 60  VVAFIRTENEREVAEP--SELIEQSLTRFIGRVKLFKGKLNVAPDHP-QLKKLSLKAKTK 116
           V     + + +  A    +E+I++ + + IG++K+++G+  + P  P Q + ++L+   K
Sbjct: 137 VRVRQTSTDRKGKAWGFITEVIQRRVKQIIGQLKMYEGEYFIQPSMPNQHQPITLE---K 193

Query: 117 KGLNEADFQEGDWVVAHLVRHPLKGD--DGFFVQISHKITDANDKIAPWWVTLAENDLPN 174
           + ++ A    GD V   +  +P + +   G  VQ      D    I     T+ E  LP 
Sbjct: 194 ELIDHAKINLGDMVRVAIDDYPTREEFSTGHIVQSMADKADTEIIIPQ---TILEYGLPY 250

Query: 175 SEPAGI----DDWQLKDDADLV-REDLTALPFVTIDGESTKDMDDALYAQQLPNGDFALT 229
             P  +      ++  D+ D   R DL  L  VTIDGE  +D DDA+YA++ P G + + 
Sbjct: 251 EFPEEVLKEAASFKEPDEQDRQGRVDLRDLALVTIDGEDARDFDDAVYAEKRPGGGYRVV 310

Query: 230 IAIADPTAYITPEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCS 289
           +AIAD + Y+     +++ A ERG ++Y P   +PMLP  L++ LCSL  +  R  + C 
Sbjct: 311 VAIADVSHYVRLGTALNEEAEERGTSVYFPHFVLPMLPEALSNGLCSLNPHLDRLCMVCD 370

Query: 290 VTIRKDGVIGDDIRFFAANIKSHARLVYDHVSDWLETGSSEQWQPSEEIAQVVRDLYAFS 349
           + + + G +     F+ A + S ARL Y  V+ +L+ G S+       + + +  L+   
Sbjct: 371 LNVSRAGRV-TQYEFYPAVMHSKARLTYTQVAAYLD-GDSQAVPEDRTVRKSLNTLFQLY 428

Query: 350 QARANWR-ETHAVVFPDRPDYRFELSADNDVVAIHADMRRTANRLVEESMITANICAGK- 407
           Q     R + HA+ F     Y         +  I    R  A++L+EE M+ AN+ A + 
Sbjct: 429 QVLKELRAKRHAMEFETVETY-MTFDELGGIKEILPRSRNEAHKLIEECMLLANVAAAEY 487

Query: 408 --TLQTTFGFGVFNTHAGFKAEKMADVVELMAVNGAPNADAETLATVEGFAALRRWLATQ 465
               +    + V +     + +K+ D V+L+ +N            V      R    + 
Sbjct: 488 SLKNEIPMLYRVHDAPEFSRTQKVRDYVKLLGLNFPEQPTQADYQAVIEATKDRIDAPSI 547

Query: 466 ETSYLDNRIRKYQSYSEIGNQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHILGKA 525
               L + ++ Y     IG     H+ +  + Y  +TSPIR+Y D++ HR +KAH+  K 
Sbjct: 548 HAVLLRSMMQAYYGPENIG-----HYGLAYEAYTHFTSPIRRYPDLLLHRAIKAHLKHKQ 602

Query: 526 PVQTPDE--TVGEELALHRKHHKIAERNVADWLYARTLADEPAKETRFQAEIFDINRPGM 583
              + ++    GE  +   +    A R+V  WL    +     +E  F   I  +   G+
Sbjct: 603 FALSGNQLAEAGEHYSQTERRADEASRSVTMWLKCHYMQQHLGEE--FDGIISAVTEFGL 660

Query: 584 RVRLLENGAMAFIPGALILDNKERIECNGEDGTV-------LI--DKEVVYKLGDVLEIV 634
            V L +          L +D    +   G+D  V       LI   +  V+ LGD + I 
Sbjct: 661 FVTLKD----------LYVDGMLHVSQLGDDFFVYDQPSQSLIGQSRGQVFGLGDEVRIK 710

Query: 635 LTEVNQENRSL 645
           +  V  E R +
Sbjct: 711 VAGVQLEERKI 721