Pairwise Alignments

Query, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 570 a.a., ATP-dependent RNA helicase RhlE from Xanthobacter sp. DMC5

 Score =  278 bits (712), Expect = 4e-79
 Identities = 156/376 (41%), Positives = 228/376 (60%), Gaps = 11/376 (2%)

Query: 28  FSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNK 87
           FS L L   I+ ALTE   V+PTPIQA AIP +L GRD +G AQTGTGKTAAF+LP+L++
Sbjct: 28  FSSLGLAEPIVRALTEANHVTPTPIQAEAIPQVLAGRDLIGIAQTGTGKTAAFALPILDR 87

Query: 88  LNLSQYKP-----QAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 142
           L     +P     +A+V++PTREL+ Q+    +  G++ + + V    GG  +  Q+RAL
Sbjct: 88  LVRHPRRPDPKSVRALVLSPTRELSGQIVDNFEKFGRHAR-ISVTLAIGGVPMGRQIRAL 146

Query: 143 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 202
             G  ++V TPGR+ DL+    + LD+    +LDEAD+ML MGFV  +  I+ + P    
Sbjct: 147 ARGVDVLVATPGRLMDLVENHAVKLDQVEVLVLDEADQMLDMGFVHAIRAIVRRLPHKRH 206

Query: 203 RVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLET 262
            + FSATMPP + E+    L +P  V V    +T  +VEQ+   V    K + +A +L T
Sbjct: 207 SLFFSATMPPAIAELAGGMLHDPVRVAVTPVAKTADRVEQRVIHVDKPNKGQLLAEVLST 266

Query: 263 EETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVAT 322
           EE D ++VF RT+   +++   L   G  A A+HG+  Q+ R+R +   ++G I  L+AT
Sbjct: 267 EEIDRALVFARTKHGADKVVRVLAKCGIAAEAIHGNKSQNQRDRVLLAFREGKIRTLIAT 326

Query: 323 DVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIER 382
           D+ ARG+DV  ++HV NYD+P   ESY+HRIGRT RAGR+G AI      +   L++IER
Sbjct: 327 DIAARGIDVTGVSHVINYDLPNVPESYVHRIGRTARAGREGIAISFCDHEERAYLKSIER 386

Query: 383 VTRSSMEEIQLPHRDK 398
           + +     +Q+P  D+
Sbjct: 387 LIK-----LQIPATDR 397