Pairwise Alignments

Query, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 532 a.a., ATP-dependent RNA helicase RhlE from Xanthobacter sp. DMC5

 Score =  274 bits (701), Expect = 7e-78
 Identities = 154/365 (42%), Positives = 216/365 (59%), Gaps = 9/365 (2%)

Query: 26  IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 85
           + FS+L L+  +L+A+ + G+ +PTPIQA AIP +L  RD LG AQTGTGKTAAF+LP+L
Sbjct: 1   MSFSELGLSDKVLAAVADTGYTTPTPIQAQAIPHVLARRDVLGLAQTGTGKTAAFTLPML 60

Query: 86  NKLNLSQYK---PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 142
             L   + +   P+ +++ PTRELA QV       G+  K L V  + GG S  DQ   L
Sbjct: 61  TLLEQGRARARMPRTLILEPTRELAAQVEENFTRYGKYSK-LNVALLIGGVSFGDQDTKL 119

Query: 143 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 202
             G  +++ TPGR+ D + R RL L      ++DEAD ML MGF+ D+  I +  P + Q
Sbjct: 120 VRGVDVLIATPGRLLDHVERGRLLLSGIEVLVIDEADRMLDMGFIPDIERICKLVPFTRQ 179

Query: 203 RVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKG---VEKDEAMARL 259
            + FSATMPP ++ +V +FL +P  V+V+    T   V Q+  V  G    EK E +  L
Sbjct: 180 TLFFSATMPPEIQRLVSQFLSSPVRVEVSKPASTATTVTQEL-VASGREDYEKREVLREL 238

Query: 260 LET-EETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDI 318
           + + E     I+F   ++D   L   L   GF A ALHGD+ Q  R + +D  + G   +
Sbjct: 239 IRSCENLQNGIIFCNRKRDVAVLHRSLQKHGFNAVALHGDMDQHARIKALDEFRNGEATL 298

Query: 319 LVATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLR 378
           LVA+DV ARGLD+P ++HV+NYD+P   E Y+HRIGRTGRAGR G A  +V     + L 
Sbjct: 299 LVASDVAARGLDIPAVSHVFNYDVPHHSEDYVHRIGRTGRAGRAGTAYTMVTHLDAKSLS 358

Query: 379 TIERV 383
            IE++
Sbjct: 359 AIEKL 363