Pairwise Alignments

Query, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 444 a.a., DEAD/DEAH box helicase from Pseudomonas simiae WCS417

 Score =  275 bits (704), Expect = 2e-78
 Identities = 152/366 (41%), Positives = 213/366 (58%), Gaps = 6/366 (1%)

Query: 28  FSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNK 87
           F+ L L   +L AL  +G+ +PTP+QA AIP +L GRD +  AQTGTGKTA F++PLL  
Sbjct: 3   FATLGLIEPLLRALETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFAVPLLQL 62

Query: 88  LNLSQYK-----PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 142
           L +   K      +A+++ PTRELA QV A +    QN+  L    +YGG SI  QM  L
Sbjct: 63  LTMEGPKVAANSARALILCPTRELAEQVHASVAEYAQNLP-LTTYAVYGGVSINPQMMKL 121

Query: 143 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 202
           + G  I+V TPGR+ DL  ++ L L++  T +LDEAD ML +GF +++  I    P+  Q
Sbjct: 122 RKGVDILVATPGRLIDLFRQNALKLNQLQTLVLDEADRMLDLGFSEELANIYRMLPKKRQ 181

Query: 203 RVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLET 262
            +LFSAT    ++ +  + L +P  ++V+  N     V+Q    V    K E    L+  
Sbjct: 182 TLLFSATFSDDIRLLAGQMLNDPLSIEVSPRNVAANTVKQWVVPVDKKRKPELFVHLMRK 241

Query: 263 EETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVAT 322
                 +VF +TR   + L D L   G  A  +HGD PQ+ R+R +D  K   + ILVAT
Sbjct: 242 GRWKQVLVFAKTRNGVDALVDKLQGLGINADGIHGDKPQATRQRALDRFKSSEVQILVAT 301

Query: 323 DVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIER 382
           DV ARGLD+  +  V N+D+P   E YIHRIGRTGRAG  G+AI LV  +++ ML  IE 
Sbjct: 302 DVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADEVNMLSAIEM 361

Query: 383 VTRSSM 388
           +TR ++
Sbjct: 362 LTRQTL 367