Pairwise Alignments

Query, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 601 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Variovorax sp. SCN45

 Score =  277 bits (709), Expect = 9e-79
 Identities = 153/371 (41%), Positives = 223/371 (60%), Gaps = 9/371 (2%)

Query: 26  IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 85
           + F +L L  AIL A+ E G+ +PTPIQA AIP +L+G D LG AQTGTGKTAAF+LP+L
Sbjct: 1   MNFDELKLAPAILKAVHEHGYDTPTPIQAQAIPAVLDGHDLLGGAQTGTGKTAAFTLPML 60

Query: 86  NKLNLSQYKP--------QAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILD 137
           +KL++S+           +A+V+ PTRELA QV   ++  G+ ++ L    I+GG  +  
Sbjct: 61  HKLSMSRSATNKFGGTGIRALVLTPTRELAAQVEESVRTYGKYLQ-LDSTVIFGGVGMNP 119

Query: 138 QMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQA 197
           Q+  LK G  I+V TPGR+ DL  +  L L +    ILDEAD ML MGF+ DV  I+   
Sbjct: 120 QISKLKKGVDILVATPGRLLDLQQQGMLDLSQVQMLILDEADRMLDMGFIHDVKKILALV 179

Query: 198 PESAQRVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMA 257
           P+  Q +LFSAT    ++++    L+NP+ + V   N TV ++ Q    V   +K   +A
Sbjct: 180 PKEKQSLLFSATFSDDIRDLASTLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKKALLA 239

Query: 258 RLLETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVID 317
            ++   +    +VF RT+     +A++L   G +A ALHG+  QS R + +   K G I 
Sbjct: 240 HIINENKWSQVLVFTRTKFGANSVAEFLTKNGIEAMALHGNKSQSARTQALAGFKSGDIR 299

Query: 318 ILVATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRML 377
            LVATD+ ARG+D+  + HV NY+IP   E Y+HRIGRTGRAG  G+A+  V  ++   +
Sbjct: 300 ALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGSSGEAVSFVCLDEEGFM 359

Query: 378 RTIERVTRSSM 388
           + IER T+ ++
Sbjct: 360 QEIERFTKQTI 370