Pairwise Alignments

Query, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

 Score =  276 bits (707), Expect = 1e-78
 Identities = 147/370 (39%), Positives = 225/370 (60%), Gaps = 5/370 (1%)

Query: 28  FSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNK 87
           F+ L L++ IL A+ E G+ +P+PIQ  AIP +L G+D +  AQTGTGKTA F+LP+L  
Sbjct: 3   FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62

Query: 88  L----NLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALK 143
           L     +   + +A+++ PTRELA Q+   +   G+++  LK   ++GG  I  QM+ + 
Sbjct: 63  LAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLP-LKSAVVFGGVKINPQMQRMC 121

Query: 144 SGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQR 203
            GA I+V TPGR+ DL  ++ +  D+    +LDEAD ML MGF+ D+  I++  PE  Q 
Sbjct: 122 KGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQN 181

Query: 204 VLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETE 263
           +LFSAT    ++E+ +  + NP  + V+ +N T   VEQ  +     +K + + +L++  
Sbjct: 182 LLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEG 241

Query: 264 ETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATD 323
                +VF+RT+    RLA +L  +G  AAA+HG+  Q  R R +   K G + ILVATD
Sbjct: 242 NWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATD 301

Query: 324 VVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERV 383
           + ARG+D+P++  V N+++P   E Y+HRIGRTGRAG  GKAI LV   +   L  IER+
Sbjct: 302 IAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIERL 361

Query: 384 TRSSMEEIQL 393
           T++ +  + L
Sbjct: 362 TQALLPRVNL 371