Pairwise Alignments

Query, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

 Score =  291 bits (744), Expect = 6e-83
 Identities = 156/371 (42%), Positives = 235/371 (63%), Gaps = 2/371 (0%)

Query: 25  AIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPL 84
           A  F+ L L   +L+ L  MGF + TPIQA ++P +L+G+D +G+ +TG+GKTAAF L +
Sbjct: 3   ANSFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGV 62

Query: 85  LNKLNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKS 144
           L+ LN+ +++ QA+V+ PTRELA QVA +I+ LG+ I  +KVL + GG  +  Q+ +L+ 
Sbjct: 63  LSNLNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEH 122

Query: 145 GAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRV 204
           GAHI+VGTPGR+ D +++DR+ L E +T +LDEAD ML+MGF + +  I+  AP   Q +
Sbjct: 123 GAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTL 182

Query: 205 LFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKG-VEKDEAMARLLETE 263
           LFSAT P  +++I +   RN   + V  ++ T + + Q ++ V+G   +DEA+  LL   
Sbjct: 183 LFSATYPASIEQIAQSVTRNALMIKVEATHDT-SSIRQYFYKVEGSAARDEALETLLLHH 241

Query: 264 ETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATD 323
           +  +S+VF  T+++ + +AD L   GF    LHGD+ Q  R++ +       I ILVATD
Sbjct: 242 QPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATD 301

Query: 324 VVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERV 383
           V ARGLDV  +  V+NYD+  D E ++HRIGRTGRAG KG A      N+   +  I+  
Sbjct: 302 VAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEY 361

Query: 384 TRSSMEEIQLP 394
              ++E   LP
Sbjct: 362 MDIAIEPSTLP 372



 Score = 32.0 bits (71), Expect = 6e-05
 Identities = 19/70 (27%), Positives = 36/70 (51%)

Query: 504 TYQLQVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKAMSNDVSSKLRK 563
           T Q+  G+   V+  DI+GAL ++  LT   IG I L     +V + K ++    +K+  
Sbjct: 387 TIQIDGGKKDKVRPGDILGALTSDGELTAEHIGKINLFPMRAYVAVHKKIATKALNKIAN 446

Query: 564 LRIRQKEVGA 573
            +++ ++  A
Sbjct: 447 GKMKGRQFRA 456