Pairwise Alignments

Query, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 479 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Sphingobium sp. HT1-2

 Score =  282 bits (722), Expect = 2e-80
 Identities = 160/387 (41%), Positives = 229/387 (59%), Gaps = 8/387 (2%)

Query: 26  IQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL 85
           + F++L L+  I+ ALT   +  PTPIQ  AIPVLLEGRD  G AQTGTGKTAAF+LP L
Sbjct: 1   MHFNELGLSEPIIKALTAKKYAEPTPIQQKAIPVLLEGRDLCGIAQTGTGKTAAFALPSL 60

Query: 86  NKLNLSQYKPQAI------VMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQM 139
           +    +  KP  I      V++PTRELA Q+A   ++ G+ ++ L V  ++GG  +  Q+
Sbjct: 61  DYFARNP-KPTPIKGCRMLVLSPTRELAAQIAQSFRDYGRFLR-LSVETVFGGVPVNKQI 118

Query: 140 RALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPE 199
           RAL +G  IVV TPGR+ DLI +    + +   F+LDEAD+M+ MGF+  +  I +  P 
Sbjct: 119 RALSAGVDIVVATPGRLLDLIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRIAKLLPR 178

Query: 200 SAQRVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARL 259
             Q + FSATMP  ++ +  +FL +P  V VA  + T  +V QQ   V   EK   +  +
Sbjct: 179 DRQNLFFSATMPKEIEALAGQFLNDPVKVSVAPQSTTAERVRQQLTFVNQAEKQALLHIV 238

Query: 260 LETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDIL 319
           L+TEE D +++F RT+   +R+  +L   G +A A+HG+  Q+ R   +   + G   +L
Sbjct: 239 LKTEEIDRALIFTRTKHGADRVVRFLEGAGIQAFAIHGNKSQAQRTTALQAFRHGHCKLL 298

Query: 320 VATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRT 379
           VATD+ ARG+DV  ++HV N++IP   E Y+HRIGRT RAG  G AI  V  ++   L+ 
Sbjct: 299 VATDIAARGIDVSGVSHVINFEIPNVPEQYVHRIGRTARAGADGIAISFVADDERPYLKA 358

Query: 380 IERVTRSSMEEIQLPHRDKVAESRLTK 406
           IER T+   E + LP     A   L K
Sbjct: 359 IERATKVKPEIVPLPENFLEAVRNLPK 385